Job Description P39282 Confidence 100.00% Date Thu Jan 5 11:58:52 GMT 2012 Rank 1 Aligned Residues 425 % Identity 13% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		I	K	K	M	S	L	I	G	L	I	L	M	I	F	T	S	V	F	G	F	A	N	S	.	.	.	P	S	A	Y	Y	L	M	G	Y	S	A	I	P	F	Y	I	F	S	A	L	L	F	F	I	P	F	A	L	M	M	A	E	M	G	A	A	Y	R	K	E	E	G	G	I	Y	S	W	M	N	N	S	V	G	P
Query Conservation																									.	.	.
Alig confidence																									.	.	.																									.													.
Template Conservation																																																				.													.
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	.	V	A	Y	S	Y	T	K	L	G	A	K	I	.	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D
Template Known Secondary structure					B																		T	T	T	S									G	G	G															.										T	T		.			T	T	T											S
Template Predicted Secondary structure																																																				.													.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	A	F	I	G	T	F	M	W	F	S	S	Y	I	I	W	M	V	S	T	S	A	K	V	W	V	P	F	S	T	F	L	Y	G	S	D	M	T	Q	H	W	R	I	A	G	L	E	P	T	Q	V	V	G	L	L	A	V	A	W	M	I	L	V	T	V	V	A	S	K	G	I	N	K	I	A	R	I	T	A
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	.	.	.	.	.	.	.	.	.	.	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F
Template Known Secondary structure		S																																	.	.	.	.	.	.	.	.	.	.	T	T																										T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.											.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	G	I	A	V	M	C	L	N	L	V	L	L	L	V	S	I	T	I	L	L	L	N	G	G	H	F	A	Q	D	I	N	F	L	A	S	P	N	P	G	Y	Q	S	G	L	A	M	L	S	F	V	V	F	A	I	F	A	Y	G	G	I	E	A	V	G	G	L	V	D	K	T	E	N	P	E	K	N	F	A
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	V	L	V	K	L	L	I	L	G	L	F	I	F	A	G	L	I	T	I	H	P	S	.	.	.	.	.	.	.	.	.	.	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P
Template Known Secondary structure																								G	G	.	.	.	.	.	.	.	.	.	.	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.											.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	V	F	A	A	I	V	I	S	I	G	Y	S	L	A	I	F	L	W	G	V	S	T	N	W	Q	Q	V	L	S	N	G	S	V	N	L	G	N	I	T	Y	V	L	M	K	S	L	G	M	T	L	G	N	A	L	H	L	S	P	E	A	S	L	S	L	G	V	W	F	A	R	I	T	G	L	S	M	F
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L
Template Known Secondary structure																								T	T	S								T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.																						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Y	T	G	A	F	F	T	L	C	Y	S	P	L	K	A	I	I	Q	G	T	P	K	A	L	W	P	E	P	M	T	R	L	N	A	M	G	M	P	S	I	A	M	W	M	Q	C	G	L	V	T	V	F	I	L	L	V	S	F	G	G	G	T	A	S	A	F	F	N	K	L	T	L	M	A	N	V	S	M
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	.	.	.	.	.	.	.	.	.	.	M	E	G	V	A	S	I	T	S	A	V	F
Template Known Secondary structure													T	T	T											S	S			S	S			T	T	S			S		T																	S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.											340	.	.	.	.	.	.	.	.	.	350	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	Y	L	F	L	A	L	A	F	P	F	F	K	A	R	Q	D	L	D	R	P	F	V	I	F	K	T	H	L	S	A	M	I	A	T	V	V	V	V	L	V	V	T	F	A	N	V	F	T	I	I	Q	P	V	V	E	A	G	D	W	D	S	T	L	W	M	I	G	G	P	V	F	F	S	L	L	A	M
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Sequence		M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	.	.	.	.	.	.	.	.	.	V	G	G	R	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	.	.	.	.	.	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I
Template Known Secondary structure															T				.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.										.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.						.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	Y	Q	N	Y	C	S	R	V	A	K	N	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y
Template Known Secondary structure													G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.