Job Description P39282 Confidence 100.00% Date Thu Jan 5 11:58:52 GMT 2012 Rank 3 Aligned Residues 438 % Identity 12% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		P	H	T	I	K	K	M	S	L	I	G	L	I	L	M	I	F	T	S	V	F	G	F	A	N	S	P	S	A	.	.	.	Y	Y	L	M	G	Y	S	A	I	P	F	Y	I	F	S	A	L	L	F	F	I	P	F	A	L	M	M	A	E	M	G	A	A	Y	R	K	E	E	G	G	I	Y	S	W	M	N	N	S
Query Conservation																															.	.	.
Alig confidence																															.	.	.																																			.		.	.
Template Conservation																																																																				.		.	.
Template Sequence		R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	.	G	.	.	I	N	F	T	V	A	A	R	M	P
Template Known Secondary structure			G	G	G			B															S	T										T	T	T	S																								T							.		.	.							T	T	T	T
Template Predicted Secondary structure																																																																				.		.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.			.	.	90	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	P	R	F	A	F	I	G	T	F	M	W	F	S	S	Y	I	I	W	M	V	S	T	S	A	K	V	W	V	P	F	S	T	F	L	Y	G	S	D	M	T	Q	H	W	R	I	A	G	L	E	P	T	Q	V	V	G	L	L	A	V	A	W	M	I	L	V	T	V	V	A	S	K	G	I	N	K	I	A	R
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	.	.	.	.	.	.	.	.	.	.	.	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W
Template Known Secondary structure		S		T	T	T	T																															.	.	.	.	.	.	.	.	.	.	.																									T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	A	V	G	G	I	A	V	M	C	L	N	L	V	L	L	L	V	S	I	T	I	L	L	L	N	G	G	H	F	A	Q	D	I	N	F	L	A	S	P	N	P	G	Y	Q	S	G	L	A	M	L	S	F	V	V	F	A	I	F	A	Y	G	G	I	E	A	V	G	G	L	V	D	K	T	E	N	P	E	K
Query Conservation
Alig confidence																									.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	.	.	.	.	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R
Template Known Secondary structure																									.	.	.	.		T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	A	K	G	I	V	F	A	A	I	V	I	S	I	G	Y	S	L	A	I	F	L	W	G	V	S	T	N	W	Q	Q	V	L	S	N	G	S	V	N	L	G	N	I	T	Y	V	L	M	K	S	L	G	M	T	L	G	N	A	L	H	L	S	P	E	A	S	L	S	L	G	V	W	F	A	R	I	T	G	L
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I
Template Known Secondary structure																																						S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																							.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	F	L	A	Y	T	G	A	F	F	T	L	C	Y	S	P	L	K	A	I	I	Q	G	T	P	K	A	L	W	P	E	P	M	T	R	L	N	A	M	G	M	P	S	I	A	M	W	M	Q	C	G	L	V	T	V	F	I	L	L	V	S	F	G	G	G	T	A	S	A	F	F	N	K	L	T	L	M	A	N
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	.	.	.	.	.	.	.	.	.	.	.	.	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S
Template Known Secondary structure													T	T						T											S	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.													T		G	G	G	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.													.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	M	T	L	P	Y	L	F	L	A	L	A	F	P	F	F	K	A	R	Q	D	L	D	R	P	F	V	I	F	K	T	H	L	S	A	M	I	A	T	V	V	V	V	L	V	V	T	F	A	N	V	F	T	I	I	Q	P	V	V	E	A	G	D	W	D	S	T	L	W	M	I	G	G	P	V	F	F	S	L
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.
Template Sequence		A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	.	.	.	.	.	.	.	.	.	M	F	V	T	G	L	I	A	A	L	L
Template Known Secondary structure		T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.										.	430	.	.	.	.	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	M	A	I	Y	Q	N	Y	C	S	R	V	A	K	N	P	Q	W	A	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R
Template Known Secondary structure											T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.