Job Description P23842 Confidence 100.00% Date Thu Jan 5 11:39:48 GMT 2012 Rank 1 Aligned Residues 403 % Identity 21% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.								.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		R	I	Y	H	R	S	E	W	L	N	R	R	W	H	L	Q	A	L	T	D	P	L	T	L	L	P	N	F	R	A	L	E	Q	A	P	E	Q	E	.	.	.	.	.	.	.	A	G	K	S	F	C	C	L	R	I	D	N	L	E	F	M	S	R	H	Y	G	L	M	M	R	V	H	C	I	R	S	I	C	R	T
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	F	Q	E	Q	A	E	R	S	E	K	L	R	T	E	S	Y	Q	D	N	L	T	G	L	A	N	R	R	Y	F	E	M	Q	L	N	A	R	V	S	N	P	E	Q	A	S	S	G	Y	L	L	L	L	R	V	K	D	L	A	G	L	N	Q	R	L	G	G	Q	R	T	D	E	L	L	K	A	V	G	E	Q
Template Known Secondary structure								T	T											B		T	T	T	S	S														T	T		T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		383	.	.	.	.					.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.																																					.	.
Query SS confidence							.	.	.	.																																					.	.
Query Sequence		L	L	P	L	M	.	.	.	.	Q	E	N	E	K	L	Y	Q	L	P	G	S	E	L	L	L	V	L	S	G	P	E	T	E	G	R	L	Q	H	M	V	N	I	L	N	S	.	.	R	Q	I	H	W	N	N	T	G	L	D	M	G	Y	G	A	A	W	G	R	F	D	G	N	Q	E	T	L	Q	P	L	L	G
Query Conservation							.	.	.	.																																					.	.
Alig confidence							.	.	.	.																																					.	.																									.
Template Conservation																																																																									.
Template Sequence		L	S	R	E	C	A	K	Y	P	E	T	Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A	H	G	.	D	S	P	Q	A	V	L	S
Template Known Secondary structure							S	S		S	T	T	T	T							T	T								T																		T						T	S		S		T	T											T	T	.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.				520	.	.	.	.	.	.	.	.	.		530	.	.
Predicted Secondary structure																																																																	.	.	.											.
Query SS confidence																																																																	.	.	.											.
Query Sequence		Q	L	S	W	L	A	E	Q	S	C	A	H	H	H	V	L	A	L	D	S	R	E	E	M	V	S	G	Q	T	T	K	Q	V	L	L	L	N	T	I	R	T	A	L	D	Q	G	D	L	L	L	Y	A	Q	P	I	R	N	K	E	G	E	G	Y	.	.	.	D	E	I	L	A	R	L	K	Y	D	.	G	G	I
Query Conservation																																																																	.	.	.											.
Alig confidence																												.	.	.	.	.	.	.																															.	.	.											.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		L	G	D	Q	A	L	A	Q	A	E	G	Q	G	E	Q	N	W	A	C	L	D	G	D	D	H	H	.	.	.	.	.	.	.	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T
Template Known Secondary structure												S		S	S		S								S			.	.	.	.	.	.	.												T	T												S	S		T	T														T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.								.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	P	D	K	F	L	P	L	I	A	Q	F	N	L	S	A	R	F	D	L	Q	V	L	E	S	L	L	K	W	L	A	T	H	P	C	D	K	K	G	P	R	F	S	V	N	L	M	P	L	T	L	L	Q	K	N	I	A	G	R	I	I	R	L	F	K	R	Y	H	I	S	P	Q	A	V	I	L	E	I	T
Query Conservation
Alig confidence																																							.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		I	P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	H	E	E	S	.	.	.	.	.	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K	V	F	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G
Template Known Secondary structure													T	T	T																	G	G	G					.	.	.	.	.												S	S													T	G	G	G	T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.						.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Q	A	F	S	N	A	E	S	S	M	Y	N	I	E	Q	L	H	K	F	G	F	R	I	A	I	D	D	F	G	T	G	Y	A	N	Y	E	R	L	K	R	L	Q	A	D	I	I	K	I	D	G	V	F	V	K	D	I	V	T	N	T	L	D	A	M	I	V	R	S	I	T	D	L	A	K	A	K	S	L
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		E	E	Q	L	P	E	Q	.	A	V	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L
Template Known Secondary structure		G	G	G					.													T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T																	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		534	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	V	A	E	F	V	E	T	Q	Q	Q	Q	A	L	L	H	K	L	G	V	Q	Y	L	Q	G	Y	L	I	G	R	P	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	I	A	E	R	V	E	T	E	G	E	L	S	V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P
Template Known Secondary structure										S									T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.