Job Description P23842 Confidence 100.00% Date Thu Jan 5 11:39:48 GMT 2012 Rank 6 Aligned Residues 235 % Identity 26% Template c3pfmA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf Resolution 2.91 Å

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		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.		.	.	.	.	.			520	.	.	.	.	.	.	.	.	.		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure																															.						.	.											.
Query SS confidence																															.						.	.											.
Query Sequence		T	K	Q	V	L	L	L	N	T	I	R	T	A	L	D	Q	G	D	L	L	L	Y	A	Q	P	I	R	N	K	.	E	G	E	G	Y	.	.	D	E	I	L	A	R	L	K	Y	D	.	G	G	I	M	T	P	D	K	F	L	P	L	I	A	Q	F	N	L	S	A	R	F	D	L	Q	V	L	E	S	L	L	K
Query Conservation																															.						.	.											.
Alig confidence																															.						.	.											.
Template Conservation
Template Sequence		A	D	H	H	A	W	H	R	L	L	D	R	A	L	S	E	Q	H	F	Q	L	Y	F	Q	P	V	V	A	A	R	D	T	H	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	S	R	L	D	L	L	X	L	E	Q	V	L	R
Template Known Secondary structure																		T												S	S		T	T	S													T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	A	T	H	P	C	D	K	K	G	P	R	F	S	V	N	L	M	P	L	T	L	L	Q	K	N	I	A	G	R	I	I	R	L	F	K	R	Y	H	I	S	P	Q	A	V	I	L	E	I	T	E	E	Q	A	F	S	N	A	E	S	S	M	Y	N	I	E	Q	L	H	K	F	G	F	R	I	A	I	D	D
Query Conservation
Alig confidence										.	.	.	.	.																																												.
Template Conservation										.	.	.	.	.																																												.
Template Sequence		Q	X	A	S	H	E	D	C	.	.	.	.	.	L	A	L	N	L	S	A	A	T	L	A	D	P	H	A	L	N	R	V	F	E	I	L	R	Q	H	S	D	L	G	P	R	L	T	L	E	I	G	E	E	Q	L	P	.	E	Q	A	X	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R
Template Known Secondary structure			G	G	G					.	.	.	.	.																										T	G	G	G	T	T	T							S	S	S			.																T
Template Predicted Secondary structure										.	.	.	.	.																																												.
Template SS confidence
		488	.	490	.	.	.	.	.						.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.		.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	T	G	Y	A	N	Y	E	R	L	K	R	L	Q	A	D	I	I	K	I	D	G	V	F	V	K	D	I	V	T	N	T	L	D	A	M	I	V	R	S	I	T	D	L	A	K	A	K	S	L	S	V	V	A	E	F	V	E	T	Q	Q	Q	Q	A	L	L	H	K	L	G	V	Q	Y	L	Q	G	Y	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	G	R	F	S	X	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	D	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	V	E	T	E	G	E	L	Q	V	I	R	E	X	G	L	Y	G	V	Q	G	Q	L	F
Template Known Secondary structure			T	T	T	G	G	G	G	G	G					T		S						G	G	G	G	T	T	T	T	T		T																T	T										S											T		S				S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
		722	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	P	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	P	A	P
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		642	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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