Return to main results Retrieve Phyre Job Id

Job DescriptionP23842
Confidence99.90%DateThu Jan 5 11:39:48 GMT 2012
Rank19Aligned Residues151
% Identity13%Templatec3hvaA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx ggdef domain from pseudomonas2 aeruginosa
Resolution2.04 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   325....330.........340...... ...350.........360.........370.........380.........390......
Predicted Secondary structure 










........















Query SS confidence 





















. . . . . . . .

















































Query Sequence  QALTDPLTLLPNFRALEQAPEQ. . . . . . . . EAGKSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQENEKLYQL
Query Conservation   
  
 



 

  
   
  ........     
  
 
  
  

   
   

  
   
  
           
 
Alig confidence 





















........

















































Template Conservation 

  
 



 

  
   
   
           

 
 
     

   
    
  
      
           
 
Template Sequence  VSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGEEADLARF
Template Known Secondary structure 


B
TTT
ST


TTGGG

Template Predicted Secondary structure 
























Template SS confidence 















































































   266...270.........280.........290.........300.........310.........320.........330.........340.....
 
   397..400.........410.. .......420.........430.........440.........450.........460.........470...
Predicted Secondary structure 






...






















Query SS confidence 















. . .




























































Query Sequence  PGSELLLVLSGPETEG. . . RLQHMVNILNSRQIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLA
Query Conservation   
 

   
       ...                           
                    
   
        
Alig confidence 















...




























































Template Conservation      
 
                    
                


 
           

  
  

  

  
 
 
Template Sequence  GDSIFAALFKGKTPEQAQAALQRLLKKVENHLFELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQI
Template Known Secondary structure  SSST

T

TT



TT


TT
SS
Template Predicted Secondary structure 

































Template SS confidence 















































































   346...350.........360.........370.........380.........390.........400.........410.........420.....
 
   474.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  LD
Query Conservation    
Alig confidence 

Template Conservation    
Template Sequence  KQ
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 

   426.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions