Job Description P23842 Confidence 100.00% Date Thu Jan 5 11:39:48 GMT 2012 Rank 2 Aligned Residues 362 % Identity 20% Template c3gfzB_ PDB info PDB header:hydrolase, signaling protein Chain: B: PDB Molecule:klebsiella pneumoniae blrp1; PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex Resolution 2.05 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.									.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.						.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																																										.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.																																										.	.	.	.	.
Query Sequence		W	H	L	Q	A	L	T	D	P	L	T	L	L	P	N	F	R	A	L	E	Q	A	P	.	.	.	.	.	.	.	.	E	Q	E	A	G	K	S	F	C	C	L	R	I	D	N	L	E	F	M	S	R	H	Y	G	L	M	M	R	V	H	C	I	R	S	I	C	R	T	L	L	P	.	.	.	.	.	L	M	Q
Query Conservation																									.	.	.	.	.	.	.	.																																										.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.																						.	.																			.	.	.	.	.
Template Conservation																																																						.	.
Template Sequence		L	T	T	L	I	Y	R	S	Q	V	H	P	D	R	P	P	V	D	L	D	A	L	V	H	R	A	S	S	K	N	L	P	L	G	I	T	G	I	L	L	F	N	G	L	Q	F	F	Q	V	L	E	G	.	.	T	E	E	A	L	E	S	L	F	S	E	I	Q	S	D	P	R	H	R	D	V	V	E	L	M	R
Template Known Secondary structure													T	T	S																				T									S	S									.	.														T		T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	E	K	L	Y	Q	L	P	G	S	E	L	L	L	V	L	S	G	P	E	T	E	G	R	L	Q	H	M	V	N	I	L	N	S	R	Q	I	H	W	N	N	T	G	L	D	M	G	Y	G	A	A	W	G	R	F	D	G	N	Q	E	T	L	Q	P	L	L	G	Q	L	S	W	L	A	E	Q	S	C	A	H
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Y	S	A	Y	R	R	F	H	G	T	G	M	R	I	L	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	F	E	T	D	G	A	L	E	E	I	L	R	F	S	T	F	G	V	T	E	P	V	N	D	R	M	F	R	L	L	S	A	F	I	A
Template Known Secondary structure					S	S		S			S	S	S						G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			T	T														S	S		G	G	G	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																										.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.			520	.	.	.	.	.	.	.	.	.	530			.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																																																					.	.												.	.
Query SS confidence																																																					.	.												.	.
Query Sequence		H	H	V	L	A	L	D	S	R	E	E	M	V	S	G	Q	T	T	K	Q	V	L	L	L	N	T	I	R	T	A	L	D	Q	G	D	L	L	L	Y	A	Q	P	I	R	N	K	E	G	E	G	Y	.	.	D	E	I	L	A	R	L	K	Y	D	G	.	.	G	I	M	T	P	D	K	F	L	P	L	I	A	Q
Query Conservation																																																					.	.												.	.
Alig confidence														.	.	.	.	.	.	.																																	.	.												.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		D	G	G	R	Y	C	L	P	E	P	L	Q	.	.	.	.	.	.	.	P	S	R	W	M	M	M	A	P	Q	H	L	P	G	Q	P	C	Q	F	A	L	Q	A	I	V	E	P	A	K	K	R	V	S	S	F	E	A	L	I	R	S	P	T	G	G	S	P	V	E	M	F	A	A	I	A	A	E	D	R	Y	R
Template Known Secondary structure			G	G	G	G				G	G	G		.	.	.	.	.	.	.	G	G	G										T	T	S	S											T	T	T	T												T	T	S									T	S		G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		F	N	L	S	A	R	F	D	L	Q	V	L	E	S	L	L	K	W	L	A	T	H	P	C	D	K	K	G	P	R	F	S	V	N	L	M	P	L	T	L	.	L	Q	K	N	I	A	G	R	I	I	R	L	F	K	R	Y	H	I	S	P	Q	A	V	I	L	E	I	T	E	E	Q	A	F	S	N	A	E	S	S
Query Conservation																																										.
Alig confidence																		.	.	.	.	.	.	.	.																	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		F	D	L	E	S	K	A	Y	A	F	A	L	A	G	Q	L	.	.	.	.	.	.	.	.	P	L	G	K	H	Q	L	A	I	N	L	L	P	G	S	L	Y	H	H	P	D	A	V	G	W	L	M	D	S	L	L	A	A	G	L	R	P	D	Q	V	L	I	E	V	T	E	T	E	V	I	T	C	F	D	Q	F
Template Known Secondary structure						T											T	.	.	.	.	.	.	.	.	T			S														S	S	S	S												T	T			G	G	G												T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.									230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	N	I	E	Q	L	H	K	F	G	F	R	I	A	I	D	D	F	G	T	G	Y	A	N	Y	E	R	L	K	R	L	Q	A	D	I	I	K	I	D	G	V	F	V	K	D	I	V	T	N	T	L	D	A	M	I	V	R	S	I	T	D	L	A	K	A	K	S	L	S	V	V	A	E	F	V	E	T	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	V	L	K	A	L	R	V	A	G	M	K	L	A	I	D	D	F	G	A	G	Y	S	G	L	S	L	L	T	R	F	Q	P	D	K	I	K	V	D	A	E	L	V	R	D	I	H	I	S	G	T	K	Q	A	I	V	A	S	V	V	R	C	C	E	D	L	G	I	T	V	V	A	E	G	V	E	T	L	E
Template Known Secondary structure												T									T	S	S	S			S	T								S										T	T	G	G	G	B																		T										S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	L	L	H	K	L	G	V	Q	Y	L	Q	G	Y	L	I	G	R	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	W	C	W	L	Q	S	V	G	I	R	L	F	Q	G	F	L	F	S	R	P	C
Template Known Secondary structure									T	T						S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions