 |
Job Description | P23842 | Confidence | 74.73% | Date | Thu Jan 5 11:39:48 GMT 2012 |
Rank | 134 | Aligned Residues | 66 |
% Identity | 15% | Template | c2vncB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:glycogen operon protein glgx; |
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
|
Resolution | 3.0 Å |
|
 |
  |   |
625 | . | . | . | . | 630 | . | . | . | . | . | . | . | . | |
|
|
|
. | 640 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | N | I | E | Q | L | H | K | F | G | F | R | I | A | . |
. |
. |
. |
I | D | D | F | G | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | Y | A | N | Y | E | R | L | K | R | L | Q | A | D | I | I | K | I | D | G | V | F | V | K | D | I | V | T | N | T | L | D | A | M | I | V | R | S | I | T | D | L | A |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |
|   |   |   |   | . | . | . | . |
|
|
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |
|   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|   |
|
|
|
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
| . | . | . | . | . | . | . | . |   |   |   |
|   |
|
|   |   |   |
|
|
|   | . |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |
|
Template Sequence |   |
Q | M | I | S | Y | L | K | D | L | G | I | T | T | V | E | L | M | P | V | F | H | F | I | D | Q | R | F | L | T | D | K | G | L | T | N | Y | W | G | Y | D | . |
. |
. |
. |
. |
. |
. |
. |
P | I | N | F | F | S | P | E | C | R | Y | S | S | T | . |
G | C | L | G | G | Q | V | L | S | F | K | K | M | V | N | E | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
|
|
| B |
| B |
|
|
|  |  |  |  | T | T | S |
|
|
|
| S |
|
|
| . | . | . | . | . | . | . | . | B | S |
| S | S | S | B |
| G | G | G |
| T | T | . |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
206 | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 250 | . | . | . | . | . | . | . | . | . | |
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . |
  |
  |   |
688 | . | 690 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | K | S | L | S | V | V | A | E | F | V |
Query Conservation |   |
  |   |   |   |   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|
|
|
|
|
Template Sequence |   |
H | N | A | G | I | E | V | I | I | D | V | V |
Template Known Secondary structure |   |
 |  |  | T |
|  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
277 | . | . | 280 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|