Return to main results Retrieve Phyre Job Id

Job DescriptionP23842
Confidence35.45%DateThu Jan 5 11:39:48 GMT 2012
Rank292Aligned Residues157
% Identity18%Templatec1ydyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of periplasmic glycerophosphodiester2 phosphodiesterase from escherichia coli
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   556...560......... 570.........580.... .....590.........600.. .......610.........620.........
Predicted Secondary structure  .





...





..


Query SS confidence 













.














. . .

















. .


























Query Sequence  LESLLKWLATHPCD. KKGPRFSVNLMPLTL. . . LQKNIAGRIIRLFKRYHI. . SPQAVILEITEEQAFSNAESSMYNIEQ
Query Conservation 
             .       



   
...            
     ..    
  

 
                
Alig confidence 













.














...

















..














...








Template Conservation 
 


                 



               
   
           
 
 


   
...  
      
Template Sequence  FEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADEL. . . KRIKNELEP
Template Known Secondary structure  S




TT

TT

STTSSBS
...T
Template Predicted Secondary structure 


























...


Template SS confidence 















































































   148.150.........160.........170.........180.........190.........200.........210..... ....220....
 
   630.........640...... ...650.........660.........670.........680......
Predicted Secondary structure 







.......................









Query SS confidence 
















. . . . . . . . . . . . . . . . . . . . . . .







































Query Sequence  LHKFGFRIAIDDFGTGY. . . . . . . . . . . . . . . . . . . . . . . ANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIVRSITDL
Query Conservation 
   
    




 
 ....................... 
   
     
 



   
               
   
Alig confidence 
















.......................








.












.















Template Conservation                                                   .             .            

  
Template Sequence  KMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEY. ADGIGPDYHMLIE. ETSQPGNIKLTGMVQD
Template Known Secondary structure  T




GGG



TTS



GGGGSTTTTT.
SBGGGTB
.TT
BTTB

B
S
Template Predicted Secondary structure 































.






.









Template SS confidence 















































































   225....230.........240.........250.........260.........270... ......280...... ...290.........300..
 
   687..690.........700....... ..710.......
Predicted Secondary structure 






...........



Query SS confidence 




















. . . . . . . . . . .









Query Sequence  AKAKSLSVVAEFVETQQQQAL. . . . . . . . . . . LHKLGVQYLQ
Query Conservation 
       





       ...........
   
    
Alig confidence 




















...........









Template Conservation      

 
  



                  
   





Template Sequence  AQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLF
Template Known Secondary structure  TT


B
B
TTS

TT
SSTTS

S
Template Predicted Secondary structure 














Template SS confidence 









































   303......310.........320.........330.........340....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions