 |
Job Description | P52636 | Confidence | 13.34% | Date | Thu Jan 5 12:05:55 GMT 2012 |
Rank | 83 | Aligned Residues | 27 |
% Identity | 33% | Template | c2b5lC_ |
PDB info |
PDB header:protein binding/viral protein | Chain: C: PDB Molecule:nonstructural protein v; |
PDBTitle: crystal structure of ddb1 in complex with simian virus 5 v2 protein
|
Resolution | 2.85 Å |
|
  |   |
222 | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | C | R | Y | L | C | P | Y | G | A | L | M | G | V | V | S | L | L | S | P | F | K | I | R | R | N | A | E | S | C | I | D | C | G | K | C | A | K | N | C |
Query Conservation |   |
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
| . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |   |   |   |
|
|   |   |
| . |   |
|   |   |
|
|   |   |
|
Template Sequence |   |
W | C | N | P | S | C | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | P | I | T | A | A | A | R | R | F | E | C | . |
T | C | H | Q | C | P | V | T | C |
Template Known Secondary structure |   |
 |  |  |  | S | S | . | . | . | . | . | . | . | . | . | . | . | . | S |
|
|
| S | S |
|  |  |  |
|
| . | S | S | S | S |
|
| S |
|
|
Template Predicted Secondary structure |   |
 |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |
|
|  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
189 | 190 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 200 | . | . | . | . | . | . | |
. | . | . | 210 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|