Job Description P45804 Confidence 7.19% Date Thu Jan 5 12:03:49 GMT 2012 Rank 89 Aligned Residues 57 % Identity 18% Template c1a3qA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna Resolution 2.10 Å

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		498	.	500	.	.	.	.	.	.	.	.			.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		D	G	Q	A	E	R	I	L	F	A	F	.	.	N	D	D	R	V	I	V	Y	G	F	D	S	D	R	K	E	W	D	A	L	D	M	S	L	L	P	N	E	I	T	K	E	K	L	L	T	A	A	K	D	G	K	L	G	T	K	P	K	A	W	R	D	L	V	V
Query Conservation													.	.
Alig confidence													.	.																						.									.	.	.	.	.	.	.	.
Template Conservation																																				.									.	.	.	.	.	.	.	.
Template Sequence		R	G	G	D	E	V	Y	L	L	C	D	K	V	Q	K	D	D	I	E	V	R	F	Y	E	D	D	E	N	G	W	Q	A	F	G	.	D	F	S	P	T	D	V	H	.	.	.	.	.	.	.	.	K	Q	Y	A	I	V	F	R	T	P	P	Y	H	K	M	K	I
Template Known Secondary structure		T										S	S			T	T	T									S	S	S							.	B			G	G	G			.	.	.	.	.	.	.	.	T	T	T										S		T	T
Template Predicted Secondary structure																																				.									.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.									.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions