Job Description P23481 Confidence 98.95% Date Thu Jan 5 11:39:27 GMT 2012 Rank 40 Aligned Residues 159 % Identity 19% Template c2fugC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Resolution 3.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	R	F	V	V	A	E	P	L	W	C	T	G	C	N	T	C	L	A	A	C	S	D	V	H	K	T	Q	G	L	Q	Q	H	P	R	L	A	L	A	K	T	S	T	I	T	A	P	V	V	C	H	H	C	E	E	A	P	C	L	Q	V	C	P	V	N	A	I	S	Q	R	D	D	A	I	Q	L	N	E	S
Query Conservation
Alig confidence																																																								.	.
Template Conservation																																																								.	.
Template Sequence		L	S	P	F	V	I	L	D	R	E	R	C	I	H	C	K	R	C	V	R	Y	F	E	E	V	P	G	D	E	V	L	D	F	I	E	R	G	V	H	T	F	I	G	T	M	D	F	G	L	P	S	G	F	S	.	.	G	N	I	T	D	I	C	P	V	G	A	L	L	D	L	T	A	R	F	R	A	R	N	W
Template Known Secondary structure		S	S	S	S	S					S															T	T								B	S		G	G	G		B				S	S	T	T			S	S			.	.	T							S	S	S	S	S	B		G	G	G	S	S	S			T	T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		81	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		L	C	.	.	.	.	I	G	C	K	L	C	A	V	V	C	P	F	G	A	I	S	A	S	G	S	R	P	V	N	A	H	A	Q	Y	V	F	Q	A	E	G	S	L	K	D	G	E	E	N	A	P	T	Q	H	A	L	L	R	W	E	P	G	V	Q	T	V	A	V	K	C	D	L	C	D	F	L	P	E	G	P
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.												.	.	.																																								.												.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.																																								.												.	.	.	.	.	.	.	.	.
Template Sequence		E	M	E	E	T	P	T	T	C	A	L	C	P	V	G	C	G	.	.	.	I	T	A	D	T	R	S	G	E	L	L	R	I	R	A	R	E	V	P	E	V	N	E	I	W	I	C	D	A	G	R	F	G	H	E	W	A	D	Q	.	N	R	L	K	T	P	L	V	R	K	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S									S	S	T	T				.	.	.							T	T											T	T	S	S		S									T	T					S	.	S				S						S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.																																								.												.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	V	R	A	C	P	N	Q	A	L	R	L	I	T	G	D	S	L	Q	R	Q	M	K	E	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	R	L	V	E	A	T	W	E	E	A	F	L	A	L	K	E	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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