Job Description P0A6P7 Confidence 99.67% Date Thu Jan 5 11:03:39 GMT 2012 Rank 84 Aligned Residues 165 % Identity 12% Template c3tw8B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-35; PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	G	I	E	V	A	F	A	G	R	S	N	A	G	K	S	S	A	L	N	T	L	T	N	Q	K	S	L	A	R	T	S	K	T	P	G	R	T	Q	L	I	N	L	F	E	V	A	D	G	K	R	L	V	D	L	P	G	Y	G	Y	A	E	V	P	E	E	M	K	R	K	W	Q	R	A	L	G	E	Y	L
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		D	H	L	F	K	L	L	I	I	G	D	S	G	V	G	K	S	S	L	L	L	R	F	A	D	N	T	S	Y	I	T	T	I	G	V	D	F	K	I	R	T	V	E	I	N	G	E	K	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	T	I	T	S	.	.	.	.	.	.	.	.	.	.	T	Y	Y
Template Known Secondary structure													T	T	S											S					T	T	T	T	S											T	T											T	T	G	G	G		S	S			G	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.											.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	R	Q	S	L	Q	G	L	V	V	L	M	D	I	R	H	P	L	K	D	L	D	Q	Q	M	I	E	W	A	V	D	S	N	I	A	V	L	V	L	L	T	K	A	D	K	L	A	S	G	A	R	K	A	Q	L	N	M	V	R	E	A	V	L	A	F	N	G	D	V	Q	V	E	T	F	S	S	L	K	K
Query Conservation
Alig confidence																																																													.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		R	G	T	H	G	V	I	V	V	Y	D	V	T	S	A	E	S	F	V	N	V	K	R	W	L	H	E	I	N	Q	N	C	D	D	V	C	R	I	L	V	G	N	K	N	D	D	P	E	R	K	V	V	E	T	E	D	A	Y	K	.	.	.	.	F	A	G	Q	M	G	I	Q	L	F	E	T	S	A	K	E	N
Template Known Secondary structure		T	T		S								T	T																				T	T	S									T	T		G	G	G			S								.	.	.	.						T							B	T	T	T	T
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	D	K	L	R	Q	K	L	D	T	W	F	S	E	M	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	V	E	E	M	F	N	C	I	T	E	L	V	L	R	A	K	K
Template Known Secondary structure		B	S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions