Job Description P0A6P7 Confidence 99.45% Date Thu Jan 5 11:03:39 GMT 2012 Rank 223 Aligned Residues 175 % Identity 15% Template c3izq1_ PDB info PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome Resolution 9.50 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																	.	50	.	.	.	.	.	.																	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	T	G	I	E	V	A	F	A	G	R	S	N	A	G	K	S	S	A	L	N	T	L	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	S	L	A	R	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	P	G	R	T	Q	L	I	N	L	F	E	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	P	H	L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	M	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	E	S	E	T	M	G	K	S	S	F	K	F	A	W	I	M	D	Q	T	N	E	E	R	E	R	G	V	T	V	S	I	C	T	S	H	F	S	T	H
Template Known Secondary structure														S	S	S											S		S	S		S												S	S		S	S	S	S			S	S	S												T	T	T			S		S							S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.																.
Query SS confidence																																																								.	.	.	.	.	.	.																.
Query Sequence		A	D	G	K	R	L	V	D	L	P	G	Y	G	Y	A	E	V	P	E	E	M	K	R	K	W	Q	R	A	L	G	E	Y	L	E	K	R	Q	S	L	Q	G	L	V	V	L	M	D	I	R	H	P	L	K	D	.	.	.	.	.	.	.	L	D	Q	Q	M	I	E	W	A	V	D	S	N	I	A	.	V	L	V
Query Conservation																																																								.	.	.	.	.	.	.																.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.																.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	N	F	T	I	V	D	A	P	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	F	V	P	N	A	I	M	G	I	S	Q	A	D	M	A	I	L	C	V	D	C	S	T	N	A	F	E	S	G	F	D	L	D	G	Q	T	K	E	H	M	L	L	A	S	S	L	G	I	H	N	L	I	I
Template Known Secondary structure		S										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	T	S	S			S									S						T	T			T	T	S											T	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.														.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		143	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure										.	.																					.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																					.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	T	K	A	D	K	L	.	.	A	S	G	A	R	K	A	Q	L	N	M	V	R	E	A	V	L	A	F	N	.	.	.	G	D	V	Q	V	E	T	F	S	S	L	K	K	Q	G	V	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	Q	K	L	D	T	W	F	S	E	M	Q	P
Query Conservation										.	.																					.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																					.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	M	N	K	M	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D	I	G	F	F	E	D	N	I	N	W	V	P	I	S	G	F	S	G	E	G	V	Y	K	I	E	Y	T	D	E	V	R	Q	W	Y	N	G	P	N	L	M	S	T	L	E	N	A	A	F	K	I	S	K
Template Known Secondary structure						T	T	T	T	T	T																				T			G	G	G								T	T	T		T	T	T	S	S		T	T	S		T	T			S			S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		203	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	E	T	Q	D	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	E	G	I	N	K	D
Template Known Secondary structure		S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions