Job Description P0A6P7 Confidence 98.19% Date Thu Jan 5 11:03:39 GMT 2012 Rank 269 Aligned Residues 162 % Identity 20% Template c3cx6A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:guanine nucleotide-binding protein alpha-13 PDBTitle: crystal structure of pdzrhogef rgrgs domain in a complex2 with galpha-13 bound to gdp Resolution 2.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.
Predicted Secondary structure																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	I	E	V	A	F	A	G	R	S	N	A	G	K	S	S	A	L	N	T	L	.	.	T	N	Q	K	S	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	V	K	I	L	L	L	G	A	G	E	S	G	K	S	T	F	L	K	Q	M	R	I	I	H	G	Q	D	F	D	Q	R	A	R	E	E	F	R	P	T	I	Y	S	N	V	I	K	G	M	R	V	L	V	D	A	R	E	K	L	H	I	P	W	G	D	N	K	N	Q	L	H	G	D	K	L	M	A	F	D
Template Known Secondary structure											S	T	T	S	S												T	S										T	T																						T	T				S		G	G	G									T	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
																																																																										54	.	.	.	.	.	60	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	S	K	T	P	G	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	A	P	M	A	A	Q	G	M	V	E	T	R	V	F	L	Q	Y	L	P	A	I	R	A	L	W	E	D	S	G	I	Q	N	A	Y	D	R	R	R	E	F	Q	L	G	E	S	V	K	Y	F	L	D	N	L	D	K	L	G	V	P	D	Y	I	P	S	Q	Q	D	I	L	L	A	R	R	P	T	K	G	I
Template Known Secondary structure		T	T	S					T	T																													T	G	G	G	S				T							T	T						S	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.													.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	L	I	N	L	F	E	V	A	D	G	K	R	L	V	D	L	P	G	Y	G	Y	A	E	V	P	E	E	M	K	R	K	W	Q	R	A	L	G	E	Y	L	E	K	R	Q	S	L	Q	G	L	V	V	L	M	D	I	R	H	P	.	.	.	.	.	.	.	.	.	.	.	.	L	K	D	L	D	Q	Q	M
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																				.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		.	H	E	Y	D	F	E	I	K	N	V	P	F	K	M	V	D	V	G	G	.	.	.	.	.	.	.	.	.	.	L	R	S	E	R	K	R	W	F	E	C	F	D	S	V	T	S	I	L	F	L	V	S	S	S	E	F	D	Q	V	L	M	E	D	R	Q	T	N	R	L	T	E	S	L	N	I	F	E	T	I
Template Known Secondary structure		.								T	T											.	.	.	.	.	.	.	.	.	.	S	T	T	T	G	G	G	G	G	G	G		T	T										T	T	G	G	G		B		S	S	S	T	T	S	B
Template Predicted Secondary structure		.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
			207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.											.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	W	A	V	D	S	N	I	A	V	L	V	L	L	T	K	A	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	S	G	A	R	K	A	Q	L	N	M	V	R	E	A	V	L	A	F	N	G	D	V	Q	V	E	T	F	S	S	L	K	K	Q	G	V	D	K	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	N	R	V	F	S	N	V	S	I	I	L	F	L	N	K	T	D	L	L	E	E	K	V	Q	V	V	S	I	K	D	Y	F	L	E	F	E	G	D	P	H	C	L	R	D	V	Q	K	F	L	V	E	C	F	R	G	K	R	R	D	R	P	L	Y	H	H	F	T	T	A	I	N	T	E	N	I	R	L	V
Template Known Secondary structure			T		G	G	G	T	T	S																T	T	T			G	G	G	T		T	T			S		T	T															T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	K	L	D	T	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	D	V	K	D	T	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions