Job Description P0A6P7 Confidence 99.66% Date Thu Jan 5 11:03:39 GMT 2012 Rank 99 Aligned Residues 161 % Identity 16% Template c3bbpA_ PDB info PDB header:protein transport/splicing Chain: A: PDB Molecule:ras-related protein rab-6a; PDBTitle: rab6-gtp:gcc185 rab binding domain complex Resolution 3.00 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	V	A	F	A	G	R	S	N	A	G	K	S	S	A	L	N	T	L	T	N	Q	K	S	L	A	R	T	S	K	T	P	G	R	T	Q	L	I	N	L	F	E	V	A	D	G	K	R	L	V	D	L	P	G	Y	G	Y	A	E	V	P	E	E	M	K	R	K	W	Q	R	A	L	G	E	Y	L	E	K	R
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	L	V	F	L	G	E	Q	S	V	G	K	T	S	L	I	T	R	F	M	Y	D	S	F	D	N	T	Y	Q	A	T	I	G	I	D	F	L	S	K	T	M	Y	L	E	D	R	T	V	R	L	Q	L	W	D	T	A	G	L	E	R	F	R	S	L	I	P	S	Y	.	.	.	.	.	.	.	.	.	.	I
Template Known Secondary structure									S	T	T	S	S										T	S					S						S											T	T													S	S	G	G	G	T	T					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.											.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	Q	G	L	V	V	L	M	D	I	R	H	P	L	K	D	L	D	Q	Q	M	I	E	W	A	V	D	S	N	I	A	V	L	V	L	L	T	K	A	D	K	L	A	S	G	A	R	K	A	Q	L	N	M	V	R	E	A	V	L	A	F	N	G	D	V	Q	V	E	T	F	S	S	L	K	K	Q	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	S	T	V	A	V	V	V	Y	D	I	T	N	V	N	S	F	Q	Q	T	T	K	W	I	D	D	V	R	T	E	R	G	S	D	V	I	I	M	L	V	G	N	K	T	D	L	A	D	K	R	Q	V	S	I	E	E	G	E	R	K	A	K	E	L	N	V	M	F	I	E	T	S	A	K	A	G	Y	N	V
Template Known Secondary structure		T	T		S								T	T							T													T	T	S	S									G	G	G		T	T			S												T	T							B	T	T	T	T	B	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		187	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	R	Q	K	L	D	T	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Q	L	F	R	R	V	A	A	A	L
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions