Job Description P0A6P7 Confidence 99.64% Date Thu Jan 5 11:03:39 GMT 2012 Rank 124 Aligned Residues 177 % Identity 19% Template c3agqA_ PDB info PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Resolution 3.22 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		M	S	A	P	D	I	R	H	L	P	S	D	T	G	.	I	E	V	A	F	A	G	R	S	N	A	G	K	S	S	A	L	N	T	L	T	N	Q	K	S	L	A	R	T	S	K	T	P	G	R	T	Q	L	I	N	L	F	E	V	A	D	G	K	R	L	V	D	L	P	G	Y	G	Y	A	E	V	P	E	E	M
Query Conservation																.
Alig confidence																.																									.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	K	Q	S	H	M	S	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	.	.	.	.	.	A	K	T	Y	G	G	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	T	G	G	G						S											T	T	S	S												T	.	.	.	.	.	T	T	T	S											S	S											.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.												.
Query SS confidence																																																		.												.
Query Sequence		K	R	K	W	Q	R	A	L	G	E	Y	L	E	K	R	Q	S	L	Q	G	L	V	V	L	M	D	I	R	H	P	L	K	D	L	D	Q	Q	M	I	E	W	A	V	D	S	N	I	A	.	V	L	V	L	L	T	K	A	D	K	L	.	A	S	G	A	R	K	A	Q	L	N	M	V	R	E	A	V	L	A	F
Query Conservation																																																		.												.
Alig confidence		.	.	.																																														.												.
Template Conservation		.	.	.
Template Sequence		.	.	.	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y
Template Known Secondary structure		.	.	.											T	S				S								T	T	T		S		G	G	G										T	T		S										T	T		S		T	T	T												T	G	G	G
Template Predicted Secondary structure		.	.	.
Template SS confidence
					369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		170				.	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.														.	.	.	.	.	.	.	.
Query SS confidence			.	.	.														.	.	.	.	.	.	.	.
Query Sequence		N	.	.	.	G	D	V	Q	V	E	T	F	S	S	L	K	K	.	.	.	.	.	.	.	.	Q	G	V	D	K	L	R	Q	K	L	D	T	W	F	S	E	M	Q	P	V	E	E	T	Q
Query Conservation			.	.	.														.	.	.	.	.	.	.	.
Alig confidence			.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P
Template Known Secondary structure		T	S		T	T	T								T	T	T	T	T	T	T																		T	S						G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions