Job Description P0A6P7 Confidence 99.58% Date Thu Jan 5 11:03:39 GMT 2012 Rank 170 Aligned Residues 153 % Identity 18% Template c2o52B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-4b; PDBTitle: crystal structure of human rab4b in complex with gdp Resolution 2.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	T	G	I	E	V	A	F	A	G	R	S	N	A	G	K	S	S	A	L	N	T	L	T	N	Q	K	S	L	A	R	T	S	K	T	P	G	R	T	Q	L	I	N	L	F	E	V	A	D	G	K	R	L	V	D	L	P	G	Y	G	Y	A	E	V	P	E	E	M	K	R	K	W	Q	R	A	L	G	E	Y
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	F	L	F	K	F	L	V	I	G	S	A	G	T	G	K	S	C	L	L	H	Q	F	I	E	V	E	F	G	S	R	V	V	N	V	G	G	K	T	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	S	V	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	Y
Template Known Secondary structure												S	S	T	T	S	S																					T	T											T	T	G	G	G	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.																			.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	R	Q	S	L	Q	G	L	V	V	L	M	D	I	R	H	P	L	K	D	L	D	Q	Q	M	I	E	W	A	V	D	S	N	I	A	V	L	V	L	L	T	K	A	D	K	L	A	S	G	A	R	K	A	Q	L	N	M	V	R	E	A	V	L	A	F	N	G	D	V	Q	V	E	T	F	S	S	L	K
Query Conservation
Alig confidence																																																														.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		R	G	A	A	G	A	L	L	V	Y	D	I	T	S	R	E	T	Y	N	S	L	A	A	W	L	T	D	A	R	T	L	A	S	P	N	I	V	V	I	L	C	G	N	K	K	D	L	D	P	E	R	E	V	T	F	L	E	A	S	R	.	.	.	.	F	A	Q	E	N	E	L	M	F	L	E	T	S	A	L	T
Template Known Secondary structure		T	T		S								T	T							T												T		T	T										G	G	G	G	G	G			S								.	.	.	.					T	T								T	T	T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	G	V	D	K	L	R	Q	K	L	D	T	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	N	V	E	E	A	F	L	K	C	A	R	T	I
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions