Job Description P0A6P7 Confidence 99.67% Date Thu Jan 5 11:03:39 GMT 2012 Rank 81 Aligned Residues 171 % Identity 15% Template c1d2eA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp Resolution 1.94 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	G	I	E	V	A	F	A	G	R	S	N	A	G	K	S	S	A	L	N	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	Q	K	S	L	A	R	T	S	K	T	P	G	R	T	Q	L	I	N	L	F	E	V	A	D	G	K	R	L	V	D	L	P	G	Y	G	Y	A	E
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	K	I	L	A	E	G	G	G	A	K	F	K	K	Y	E	E	I	D	N	A	P	E	E	R	A	R	G	I	T	I	N	A	A	H	V	E	Y	S	T	A	A	R	H	Y	A	H	T	D	C	P	G	H	.	.	.	.
Template Known Secondary structure											S	S	T	T	S	S															T	T	S	B										S							T	T													S	S									S	S		.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.
Predicted Secondary structure																																																						.																	.	.	.	.
Query SS confidence																																																						.																	.	.	.	.
Query Sequence		V	P	E	E	M	K	R	K	W	Q	R	A	L	G	E	Y	L	E	K	R	Q	S	L	Q	G	L	V	V	L	M	D	I	R	H	P	L	K	D	L	D	Q	Q	M	I	E	W	A	V	D	S	N	I	.	A	V	L	V	L	L	T	K	A	D	K	L	A	S	G	A	.	.	.	.	R	K	A	Q	L	N	M
Query Conservation																																																						.																	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																												.																	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	D	Y	V	K	N	M	I	T	G	T	A	P	L	D	G	C	I	L	V	V	A	A	N	D	G	P	M	P	Q	T	R	E	H	L	L	L	A	R	Q	I	G	V	E	H	V	V	V	Y	V	N	K	A	D	A	V	Q	D	S	E	M	V	E	L	V	E	L	E	I	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.										T	S	S			S								T	T	T		S														T	T											G	G	G		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.											.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	E	A	V	L	A	F	N	G	D	V	Q	V	E	T	F	S	S	L	K	K	Q	G	V	.	.	.	.	.	.	.	.	.	.	D	K	L	R	Q	K	L	D	T	W	F	S	E	M	Q	P	V	E	E	T	Q
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	T	E	F	G	Y	K	G	E	E	T	P	I	I	V	G	S	A	L	C	A	L	E	Q	R	D	P	E	L	G	L	K	S	V	Q	K	L	L	D	A	V	D	T	Y	I	P	V	P	T	R	D	L	E	K	P
Template Known Secondary structure						T	T	S		T	T	T	S												T	T			T	T	T	T															S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions