Job Description P42603 Confidence 2.20% Date Thu Jan 5 12:01:47 GMT 2012 Rank 46 Aligned Residues 169 % Identity 11% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		G	V	G	V	I	A	F	L	I	G	I	T	.	T	F	F	N	R	D	E	R	R	F	K	K	Q	L	S	V	Y	S	A	V	I	G	V	H	F	F	L	L	G	T	Y	P	A	G	A	S	A	I	L	N	A	I	R	T	L	I	T	L	R	T	R	S	L	W	V	M	A	I	F	I	V	L	T	G	G	I	G
Query Conservation														.
Alig confidence														.																																																.
Template Conservation																																																														.
Template Sequence		W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y	T	G	S	Q	L	A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	.	A	A	G	L	F	I	L	C	G	Q	L	Y	E	R	I	H	T	R	D
Template Known Secondary structure																	T		S	B																					T	S																				.																			B
Template Predicted Secondary structure																																																														.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	F	H	H	P	V	E	L	L	P	V	I	G	T	I	V	S	T	W	A	L	F	C	C	K	G	L	T	M	R	C	V	M	W	F	S	T	C	C	W	V	I	H	N	F	W	A	G	S	I	G	G	T	M	I	E	G	S	F	L	L	M	N	G	L	N	I	I	R	F	W	R	M	Q	K	R	G	I
Query Conservation
Alig confidence																			.														.																																															.	.
Template Conservation																			.														.																																															.	.
Template Sequence		M	R	M	M	G	G	L	W	S	K	M	K	W	L	P	A	L	.	S	L	F	F	A	V	A	T	L	G	M	P	G	.	T	G	N	F	V	G	E	F	M	I	L	F	G	S	F	Q	V	V	P	V	I	T	V	I	S	T	F	G	L	V	F	A	S	V	Y	S	L	A	M	L	H	R	A	Y	F	G	.	.
Template Known Secondary structure		G	G	G			S	G	G	G	T		S	S					.									S			T	T	.	S																																												S	S	.	.
Template Predicted Secondary structure																			.														.																																															.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	F	K	V	E	K	T	P	S	A	V	D	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	K	S	Q	I	A	S	Q	E	L	P	G	M	S
Template Known Secondary structure		S	S		S	S	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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