Phyre 2 alignment of P69490 with c3kojA

Job Description P69490
Confidence 15.54% Date Thu Jan 5 12:11:44 GMT 2012

Rank 59 Aligned Residues 76

% Identity 16% Template c3kojA_

PDB info PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ycf41; PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein2 from synechococcus sp. northeast structural genomics3 consortium target snr59a.

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																											.	.														.	.								.	.	.	.
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Query Sequence	Q	M	P	E	V	G	Q	R	L	R	V	G	G	M	V	M	P	G	S	V	Q	R	D	P	N	S	.	.	L	K	V	T	F	T	I	Y	D	A	E	G	S	.	.	V	D	V	S	Y	E	G	.	.	.	.	I	L	P	D	L	F	R	E	G	Q	G	V	V	V	Q	G	E	L	E	K	G	N	H	I	L	A
Query Conservation																											.	.														.	.								.	.	.	.
Alig confidence																											.	.														.	.								.	.	.	.																			.
Template Conservation																																																																									.
Template Sequence	H	H	S	H	X	N	S	C	I	L	Q	A	T	V	V	E	A	P	Q	L	R	Y	A	Q	D	N	Q	T	P	V	A	E	X	V	V	Q	F	P	G	A	P	A	R	L	K	V	V	G	W	G	A	V	A	Q	E	L	Q	D	R	C	R	L	N	D	E	V	V	L	E	G	R	L	.	R	I	N	S	E	K	Q
Template Known Secondary structure			S	S																				T	T	S	S	S																						T												T	T										.
Template Predicted Secondary structure																																																																									.
Template SS confidence

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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