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Job DescriptionP25906
Confidence30.89%DateThu Jan 5 11:42:45 GMT 2012
Rank48Aligned Residues87
% Identity20%Templatec6paxA_
PDB info PDB header:gene regulation/dnaChain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
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Query Sequence  GAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPA
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Template Sequence  GVNQLGGVFVNGRPLPDSTRQRIVELA. HSGARPCDISRILQV. . SNGCVSKILGRYYATG. . SIRPRAIGGSKPRVATP
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   4.....10.........20.........30 .........40..... ....50.........60. ........70........
 
   99100.........110
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Query Sequence  FSPAELQKAVHD
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Template Sequence  EVVSKIAQYKQE
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   7980.........90
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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