Job Description P25906 Confidence 100.00% Date Thu Jan 5 11:42:45 GMT 2012 Rank 10 Aligned Residues 271 % Identity 25% Template c3lutA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		S	N	T	F	T	L	G	T	K	S	V	N	R	L	G	Y	G	A	M	Q	L	A	G	P	G	V	F	G	P	P	R	D	R	H	V	A	I	T	V	L	R	E	A	L	A	L	G	V	N	H	I	D	T	S	D	F	Y	G	P	H	V	T	N	Q	I	I	R	E	A	L	Y	P	Y	.	.	.	S	D	D	L
Query Conservation																																																																											.	.	.
Alig confidence																								.	.	.	.	.																																															.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		Y	R	N	L	G	K	S	G	L	R	V	S	C	L	G	L	G	T	W	V	T	F	.	.	.	.	.	G	G	Q	I	T	D	E	M	A	E	H	L	M	T	L	A	Y	D	N	G	I	N	L	F	D	T	A	E	V	Y	A	A	G	K	A	E	V	V	L	G	N	I	I	K	K	K	G	W	R	R	S	S	L
Template Known Secondary structure					S	T	T	S	S					S						T	T			.	.	.	.	.				S															T	T								T	T	G	G	G	G														T			G	G	G
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	V	T	K	I	G	A	R	R	G	E	D	A	S	W	L	P	A	F	S	P	A	E	L	Q	K	A	V	H	D	N	L	R	N	L	G	L	D	V	L	D	V	V	N	L	R	V	M	M	G	D	G	H	G	P	A	E	G	S	I	E	A	S	L	T	V	L	A	E	M	Q	Q	Q	G	L	V	K	H	I
Query Conservation
Alig confidence													.	.																																										.	.	.	.	.	.
Template Conservation													.	.																																										.	.	.	.	.	.
Template Sequence		V	I	T	T	K	I	F	W	G	G	K	.	.	A	E	T	E	R	G	L	S	R	K	H	I	I	E	G	L	K	A	S	L	E	R	L	Q	L	E	Y	V	D	V	V	F	A	N	R	P	D	P	N	T	P	.	.	.	.	.	.	M	E	E	T	V	R	A	M	T	H	V	I	N	Q	G	M	A	M	Y	W
Template Known Secondary structure								S	B			S	.	.	S	G	G	G	B	S	S																	T		S								S	S			T	T	S		.	.	.	.	.	.														T	T	S
Template Predicted Secondary structure													.	.																																										.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																		.	.	.	.	.	.																		.	.																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																		.	.																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	S	N	V	T	P	T	Q	V	A	E	A	R	K	I	.	.	.	.	.	.	A	E	I	V	C	V	Q	N	E	Y	N	I	A	H	R	A	D	.	.	D	A	M	I	D	A	L	A	H	D	G	I	A	Y	V	P	F	F	P	L	G	G	F	T	P	L	Q	S	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.	.																		.	.																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																		.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	S	R	W	S	S	M	E	I	M	E	A	Y	S	V	A	R	Q	F	N	L	I	P	P	I	C	E	Q	A	E	Y	H	M	F	Q	R	E	K	V	E	V	Q	L	P	E	L	F	H	K	I	G	V	G	A	M	T	W	S	P	L	A	C	G	I	V	S	G	K	Y	D	S	G	I	P	P	Y	S	R	A
Template Known Secondary structure					S																	T												B	T	T	B						T																		T	T	G	G	G	G	G	G	T	T	T	T	T	S			T	T	S	G	G
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
																										221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	L	S	D	V	A	A	S	L	G	A	T	P	M	Q	V	A	L	A	W	L	L	Q	R	S	P	N	I	L	L	I	P	G	T	S	S	V	A	H	L	R	E	N	M	A	A	E	K	L	.	.	H	L	S	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.
Template Conservation
Template Sequence		S	L	K	G	Y	Q	W	L	K	D	K	I	L	S	E	E	G	R	R	Q	Q	A	K	L	K	E	L	Q	A	I	A	E	R	L	G	C	T	L	P	Q	L	A	I	A	W	C	L	R	N	E	G	V	S	S	V	L	L	G	A	S	N	A	E	Q	L	M	E	N	I	G	A	I	Q	V	L	P	K	L	S	S
Template Known Secondary structure		G	S	T	T									T	S																				T	T	S												T	S	T	T									S	S									T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	S	T	L	D	G	I	S	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	V	H	E	I	D	S	I	L	G	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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