Job Description P76422 Confidence 99.96% Date Thu Jan 5 12:22:56 GMT 2012 Rank 15 Aligned Residues 219 % Identity 17% Template c3k5wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	I	N	A	L	T	I	A	G	T	D	P	S	G	G	A	G	I	Q	A	D	L	K	T	F	S	A	L	G	A	Y	G	C	S	V	I	T	A	L	V	A	Q	N	T	R	G	V	Q	S	V	Y	R	I	E	P	D	F	V	A	A	Q	L	D	S	V	F	S	D	V	R	I	D	T	T	K	I	G	M	L
Query Conservation
Alig confidence													.	.																.	.	.	.													.	.																		.	.	.
Template Conservation													.	.																.	.	.	.													.	.																		.	.	.
Template Sequence		D	Y	G	H	A	H	V	L	L	G	K	.	.	H	S	G	A	G	L	L	S	A	L	S	A	L	S	F	.	.	.	.	G	S	G	V	V	S	V	Q	A	L	E	C	.	.	E	I	T	S	N	N	K	P	L	E	L	V	F	C	E	N	F	.	.	.	P	N	L	L	S	A	F	A	L	G	X	G	L	E
Template Known Secondary structure		G	G									S	.	.	S														T	.	.	.	.	T		S							S	S	S	.	.			S	S	S	S	S		T	T	S				S	S		.	.	.		S	S		S						T	T		S
Template Predicted Secondary structure													.	.																.	.	.	.													.	.																		.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		A	E	T	D	I	V	E	A	V	A	E	R	L	Q	R	Y	Q	I	Q	N	V	V	L	D	T	V	M	L	A	K	S	G	D	P	L	L	S	P	S	A	V	A	T	L	R	S	R	L	L	P	Q	V	S	L	I	T	P	N	L	P	E	A	A	A	L	.	.	.	L	D	A	P	H	A	R	T	E	Q	E	M
Query Conservation																																																																			.	.	.
Alig confidence															.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation															.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	P	K	D	F	N	R	W	L	E	L	A	.	.	.	.	.	P	C	V	L	D	A	G	V	F	Y	H	K	E	I	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	E	K	E	A	V	L	T	P	H	P	K	E	F	L	S	L	L	N	L	V	G	I	N	I	S	X	L	E	L	L	D
Template Known Secondary structure		S			T	T								S	.	.	.	.	.						G	G	G	G	G	S	G	G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S	S																	T	S					T	T	S	G	G	G
Template Predicted Secondary structure															.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.						.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.														.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		L	E	Q	G	R	S	L	L	A	M	G	.	C	G	A	V	L	M	K	G	G	H	L	D	D	E	Q	S	P	D	W	L	F	T	R	E	G	E	Q	R	F	T	A	P	R	I	M	T	K	N	T	H	G	T	G	C	T	L	S	A	A	L	A	A	L	R	P	R	H	T	N	W	A	D	T	V	Q	E	A	K
Query Conservation													.
Alig confidence													.												.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.
Template Sequence		N	K	L	A	R	D	F	S	Q	K	Y	P	K	V	V	L	L	L	K	G	A	N	T	.	.	.	.	.	.	.	.	L	I	A	H	Q	G	Q	V	F	I	N	I	L	G	S	V	A	L	A	K	A	G	S	G	D	V	L	A	G	L	I	L	S	L	L	S	Q	N	Y	T	P	L	D	A	A	I	N	A	S
Template Known Secondary structure		S											T	T							S	S	S		.	.	.	.	.	.	.	.					T	T										G	G	G		S	T	T															T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.									.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	L	S	S	A	L	A	Q	A	D	T	L	E	V	G	H	G	I	G	P	V	H
Query Conservation
Alig confidence		.					.	.
Template Conservation		.					.	.
Template Sequence		.	L	A	H	A	.	.	L	A	S	L	E	F	K	N	N	Y	A	L	T	P	L	D
Template Known Secondary structure		.					.	.		G	G	G	G		S	S	T	T
Template Predicted Secondary structure		.					.	.
Template SS confidence
			439	440	.	.			.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions