 |
Job Description | P76422 | Confidence | 99.49% | Date | Thu Jan 5 12:22:56 GMT 2012 |
Rank | 36 | Aligned Residues | 204 |
% Identity | 21% | Template | c3i3yB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:carbohydrate kinase; |
PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae
|
Resolution | 2.15 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | |
|
. | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
| . | . |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
I | N | A | L | T | I | A | G | T | . |
. |
D | P | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | G | A | G | I | Q | A | D | L | K | T | F | S | A | L | G | A | Y | G | C | S | V | I | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|
|   |
|   |
|
| . | . |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|   |
|   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|   |
|
|
|   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|
| . |   |   |
|
|   |
|
|   |   |   |   |   |
|   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|   |
Template Sequence |   |
L | R | V | Y | V | T | G | N | I | T | V | D | E | T | W | S | I | P | D | I | P | K | K | G | A | S | I | H | G | V | K | V | S | Q | D | I | G | G | K | G | A | N | Q | A | . |
I | I | L | S | R | C | G | I | E | T | R | L | I | A | A | T | G | N | D | S | N | G | A | W | I | R | Q | Q | I | K | N | E | P | L | X |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
| S | S |
|
|
| T | T |
|
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  | . |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
|
|
| S | S |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|