Return to main results Retrieve Phyre Job Id

Job DescriptionP26266
Confidence29.56%DateThu Jan 5 11:42:50 GMT 2012
Rank17Aligned Residues33
% Identity15%Templatec3hd7A_
PDB info PDB header:exocytosisChain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30......... 40.........50.........60..
Predicted Secondary structure  ..

Query SS confidence 









. .






















Query Sequence  LNLISVLWRA. . KKTVMAVVFAFACAGLLISFILP
Query Conservation    

  
 
 ..
 


         
        
Alig confidence 









..






















Template Conservation    


  
    
  


   
   
  

  
  
Template Sequence  AKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
Template Known Secondary structure  TT

Template Predicted Secondary structure 
Template SS confidence 


































   82.......90.........100.........110......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions