Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Y	V	A	V	K	G	G	E	K	A	I	D	A	A	H	A	L	Q	E	S	R	R	R	G	D	T	D	L	P	E	L	S	V	A	Q	I	E	Q	Q	L	N	L	A	V	D	R	V	M	T	E	G	G	I	A	D	R	E	L	A
Secondary structure
SS confidence
Disorder		?					?	?															?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	L	A	L	K	Q	A	S	G	D	N	V	E	A	I	F	L	L	R	A	Y	R	T	T	L	A	K	L	A	V	S	E	P	L	D	T	T	G	M	R	L	E	R	R	I	S	A	V	Y	K	D	I	P	G	G	Q	L	L	G	P
Secondary structure
SS confidence
Disorder								?																						?		?	?	?			?	?	?	?		?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	Y	D	Y	T	H	R	L	L	D	F	T	L	L	A	N	G	E	A	P	T	L	T	T	A	D	S	E	Q	Q	P	S	P	H	V	F	S	L	L	A	R	Q	G	L	A	K	F	E	E	D	S	G	A	Q	P	D	D	I	T	R
Secondary structure
SS confidence
Disorder																	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?													?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	P	P	V	Y	P	C	S	R	S	S	R	L	Q	Q	L	M	R	G	D	E	G	Y	L	L	A	L	A	Y	S	T	Q	R	G	Y	G	R	N	H	P	F	A	G	E	I	R	S	G	Y	I	D	V	S	I	V	P	E	E	L	G
Secondary structure
SS confidence
Disorder						?	?												?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	A	V	N	V	G	E	L	L	M	T	E	C	E	M	V	N	G	F	I	D	P	P	G	E	P	P	H	F	T	R	G	Y	G	L	V	F	G	M	S	E	R	K	A	M	A	M	A	L	V	D	R	A	L	Q	A	P	E	Y	G
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																												?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Sequence		E	H	A	T	G	P	A	Q	D	E	E	F	V	L	A	H	A	D	N	V	E	A	A	G	F	V	S	H	L	K	L	P	H	Y	V	D	F	Q	A	E	L	E	L	L	K	R	L	Q	Q	E	Q	N	H	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																										?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tr8 chain A Region: 45 - 78 Aligned: 33 Modelled: 34 Confidence: 64.9% Identity: 39% PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) Phyre2 PDB 1veg chain A Region: 55 - 86 Aligned: 32 Modelled: 32 Confidence: 40.9% Identity: 25% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1vej chain A domain 1 Region: 47 - 78 Aligned: 32 Modelled: 32 Confidence: 36.6% Identity: 31% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2bwb chain A domain 1 Region: 30 - 78 Aligned: 41 Modelled: 49 Confidence: 36.6% Identity: 24% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2cwb chain A Region: 47 - 78 Aligned: 32 Modelled: 32 Confidence: 36.2% Identity: 34% PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin Phyre2 PDB 2dah chain A Region: 47 - 78 Aligned: 32 Modelled: 32 Confidence: 35.8% Identity: 28% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 Phyre2 PDB 1vdl chain A Region: 53 - 86 Aligned: 34 Modelled: 34 Confidence: 35.8% Identity: 29% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1wr1 chain B Region: 47 - 78 Aligned: 32 Modelled: 32 Confidence: 31.1% Identity: 25% PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin Phyre2 PDB 2jy5 chain A Region: 47 - 78 Aligned: 32 Modelled: 32 Confidence: 30.2% Identity: 31% PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain Phyre2 PDB 1ify chain A Region: 39 - 78 Aligned: 38 Modelled: 40 Confidence: 28.3% Identity: 24% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1aip chain C domain 1 Region: 63 - 79 Aligned: 17 Modelled: 17 Confidence: 28.1% Identity: 47% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 2dna chain A Region: 47 - 79 Aligned: 33 Modelled: 33 Confidence: 27.6% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna Phyre2 PDB 2d9s chain A Region: 39 - 81 Aligned: 41 Modelled: 43 Confidence: 27.4% Identity: 29% PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna Phyre2 PDB 1oqy chain A domain 1 Region: 39 - 78 Aligned: 38 Modelled: 40 Confidence: 27.3% Identity: 24% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2dna chain A domain 1 Region: 47 - 78 Aligned: 32 Modelled: 32 Confidence: 25.0% Identity: 25% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2dch chain X Region: 315 - 332 Aligned: 18 Modelled: 18 Confidence: 25.0% Identity: 50% PDB header:hydrolase Chain: X: PDB Molecule:putative homing endonuclease; PDBTitle: crystal structure of archaeal intron-encoded homing endonuclease i-2 tsp061i Phyre2 PDB 1xb2 chain B domain 1 Region: 63 - 79 Aligned: 17 Modelled: 17 Confidence: 24.1% Identity: 35% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1z96 chain A domain 1 Region: 40 - 78 Aligned: 37 Modelled: 39 Confidence: 24.0% Identity: 38% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2cp9 chain A domain 1 Region: 63 - 79 Aligned: 17 Modelled: 17 Confidence: 23.0% Identity: 35% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1ir1 chain S Region: 29 - 47 Aligned: 19 Modelled: 19 Confidence: 22.8% Identity: 26% Fold: RuBisCO, small subunit Superfamily: RuBisCO, small subunit Family: RuBisCO, small subunit Phyre2 1 c1tr8A_ 2 d1vega_ 3 d1veja1 4 d2bwba1 5 c2cwbA_ 6 c2dahA_ 7 d1vdla_ 8 c1wr1B_ 9 c2jy5A_ 10 d1ifya_ 11 d1aipc1 12 c2dnaA_ 13 c2d9sA_ 14 d1oqya1 15 d2dnaa1 16 c2dchX_ 17 d1xb2b1 18 d1z96a1 19 d2cp9a1 20 d1ir1s_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1tr8A_ 64.9 39 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 2 d1vega_ 40.9 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 3 d1veja1 36.6 31 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 4 d2bwba1 36.6 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 5 c2cwbA_ 36.2 34 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 6 c2dahA_ 35.8 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 7 d1vdla_ 35.8 29 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 8 c1wr1B_ 31.1 25 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 9 c2jy5A_ 30.2 31 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 10 d1ifya_ 28.3 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 11 d1aipc1 28.1 47 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 12 c2dnaA_ 27.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 13 c2d9sA_ 27.4 29 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 14 d1oqya1 27.3 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 15 d2dnaa1 25.0 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 16 c2dchX_ 25.0 50 PDB header:hydrolase Chain: X: PDB Molecule:putative homing endonuclease; PDBTitle: crystal structure of archaeal intron-encoded homing endonuclease i-2 tsp061i 17 d1xb2b1 24.1 35 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 18 d1z96a1 24.0 38 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 19 d2cp9a1 23.0 35 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 20 d1ir1s_ 22.8 26 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 21 d2daha1 not modelled 21.9 28 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 22 d1efub3 not modelled 21.1 47 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 23 c2do6A_ not modelled 20.7 26 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 24 d1rbli_ not modelled 18.6 37 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 25 c1umqA_ not modelled 16.5 17 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 26 d1umqa_ not modelled 16.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 27 d1etxa_ not modelled 15.8 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 28 d1uzhc1 not modelled 15.4 37 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 29 d1fipa_ not modelled 15.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 30 c3lwfD_ not modelled 15.1 15 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 31 d1ngka_ not modelled 14.5 18 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 32 c3d19E_ not modelled 14.1 25 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:conserved metalloprotein; PDBTitle: crystal structure of a conserved metalloprotein from bacillus cereus 33 d1bwvs_ not modelled 14.0 32 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 34 d1bxni_ not modelled 13.6 42 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 35 d1svdm1 not modelled 13.1 26 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 36 d1ylfa1 not modelled 12.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 37 c2jnhA_ not modelled 12.9 28 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 38 d1x38a2 not modelled 12.6 31 Fold:Flavodoxin-like Superfamily:Beta-D-glucan exohydrolase, C-terminal domain Family:Beta-D-glucan exohydrolase, C-terminal domain 39 d1wiva_ not modelled 12.1 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 40 c3zv0A_ not modelled 12.0 24 PDB header:cell cycle Chain: A: PDB Molecule:protein shq1; PDBTitle: structure of the shq1p-cbf5p complex 41 d1etob_ not modelled 11.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 42 c3iv1F_ not modelled 11.0 47 PDB header:hydrolase Chain: F: PDB Molecule:tumor susceptibility gene 101 protein; PDBTitle: coiled-coil domain of tumor susceptibility gene 101 43 d1ejxc2 not modelled 10.6 34 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:alpha-subunit of urease, catalytic domain 44 c2y75F_ not modelled 10.1 24 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 45 c2cosA_ not modelled 10.0 41 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase lats2; PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2) 46 d1id3c_ not modelled 10.0 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 47 c3ju8B_ not modelled 9.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 48 c2bmmA_ not modelled 9.5 15 PDB header:oxygen storage/transport Chain: A: PDB Molecule:thermostable hemoglobin from thermobifida fusca; PDBTitle: x-ray structure of a novel thermostable hemoglobin from the2 actinobacterium thermobifida fusca 49 d1v92a_ not modelled 9.4 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 50 d1bdfa1 not modelled 9.4 24 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 51 d8ruci_ not modelled 9.1 26 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 52 d2ezia_ not modelled 8.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 53 d1k3ra1 not modelled 8.4 42 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 54 c2dakA_ not modelled 8.4 24 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 55 d1wdds_ not modelled 8.1 26 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 56 d1e9yb2 not modelled 8.1 28 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:alpha-subunit of urease, catalytic domain 57 d1q8ba_ not modelled 8.1 27 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Hypothetical protein YjcS 58 d2ezha_ not modelled 8.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 59 d1gk8i_ not modelled 8.0 37 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 60 c1zvaA_ not modelled 8.0 64 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 61 d2v6ai1 not modelled 7.9 37 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 62 d2f2ga1 not modelled 7.8 43 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 63 c3f44A_ not modelled 7.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative monooxygenase; PDBTitle: crystal structure of putative monooxygenase (yp_193413.1) from2 lactobacillus acidophilus ncfm at 1.55 a resolution 64 c3iukB_ not modelled 7.2 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 65 d1ej7s_ not modelled 7.1 26 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 66 d2jssa1 not modelled 7.0 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 67 d1uzdc1 not modelled 7.0 37 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 68 c1ygmA_ not modelled 7.0 47 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein bsu31320; PDBTitle: nmr structure of mistic 69 d2hkja2 not modelled 6.9 36 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 70 d2f5va2 not modelled 6.9 20 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GMC oxidoreductases 71 c2f8nK_ not modelled 6.8 33 PDB header:structural protein/dna Chain: K: PDB Molecule:histone h2a type 1; PDBTitle: 2.9 angstrom x-ray structure of hybrid macroh2a nucleosomes 72 c3lk6A_ not modelled 6.8 20 PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis 73 d1ntca_ not modelled 6.7 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 74 c3e7lD_ not modelled 6.6 10 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 75 d1tzya_ not modelled 6.6 33 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 76 c2kzhA_ not modelled 6.5 13 PDB header:isomerase Chain: A: PDB Molecule:tryptophan biosynthesis protein trpcf; PDBTitle: three-dimensional structure of a truncated phosphoribosylanthranilate2 isomerase (residues 255-384) from escherichia coli 77 d1kx3c_ not modelled 6.5 33 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 78 d1u35c1 not modelled 6.4 20 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 79 c3cxjB_ not modelled 6.4 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 80 d2g3qa1 not modelled 6.3 34 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 81 c2rdxG_ not modelled 6.2 21 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism 82 c2o4wA_ not modelled 6.1 31 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme; PDBTitle: t4 lysozyme circular permutant 83 c3exqA_ not modelled 6.1 26 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 84 d1f66c_ not modelled 6.0 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 85 c1f66C_ not modelled 6.0 27 PDB header:structural protein/dna Chain: C: PDB Molecule:histone h2a.z; PDBTitle: 2.6 a crystal structure of a nucleosome core particle2 containing the variant histone h2a.z 86 d2cosa1 not modelled 5.9 41 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 87 d1cuka1 not modelled 5.9 50 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 88 c1xb2B_ not modelled 5.8 35 PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex 89 c2jssA_ not modelled 5.8 27 PDB header:chaperone/nuclear protein Chain: A: PDB Molecule:chimera of histone h2b.1 and histone h2a.z; PDBTitle: nmr structure of chaperone chz1 complexed with histone2 h2a.z-h2b 90 c3osyA_ not modelled 5.8 41 PDB header:hydrolase Chain: A: PDB Molecule:3c protease; PDBTitle: human enterovirus 71 3c protease 91 d1hioa_ not modelled 5.7 33 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 92 d1mxaa1 not modelled 5.7 23 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 93 d1eqza_ not modelled 5.6 33 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 94 d2p02a1 not modelled 5.5 31 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 95 d1qm4a1 not modelled 5.5 23 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 96 d1euha_ not modelled 5.5 17 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 97 c3kn1A_ not modelled 5.4 21 PDB header:protein binding Chain: A: PDB Molecule:golgi phosphoprotein 3; PDBTitle: crystal structure of golgi phosphoprotein 3 n-term2 truncation variant 98 c3c38A_ not modelled 5.4 11 PDB header:signaling protein, transferase Chain: A: PDB Molecule:autoinducer 2 sensor kinase/phosphatase luxq; PDBTitle: crystal structure of the periplasmic domain of vibrio2 cholerae luxq 99 c3bmxB_ not modelled 5.4 20 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0