Job Description P15286 Confidence 9.34% Date Thu Jan 5 11:34:44 GMT 2012 Rank 68 Aligned Residues 87 % Identity 11% Template d1s7oa_ SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors YlxM/p13-like Resolution 2.31

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		36	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.											.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure													.																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	E	S	L	M	T	K	V	T	S	.	L	T	Q	Q	Q	R	A	E	L	W	A	G	I	R	H	D	I	G	L	S	G	D	S	P	L	L	S	R	H	F	P	A	A	E	H	N	L	A	Q	R	L	L	A	A	Q	K	.	.	.	.	.	.	.	.	.	.	S	H	S	A	R	Q	L	L	A	Q	L	G
Query Conservation													.																																															.	.	.	.	.	.	.	.	.	.
Alig confidence													.																																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	M	N	A	L	F	E	F	Y	A	A	L	L	T	D	K	Q	M	N	Y	I	E	L	Y	Y	A	D	D	Y	S	L	A	E	I	A	D	E	F	G	V	S	R	Q	A	V	Y	D	N	I	K	R	T	E	K	I	L	E	T	Y	E	M	K	L	H	M	Y	S	D	Y	V	V	R	S	E	I	F	D	D	M	I
Template Known Secondary structure											G	G	G	S														T												T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	L	R	L	G	N	N	R	Q	A	V	T	D	Y	I	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	H	Y	P	H	D	E	Y	L	Q	E	K	I	S	I	L	T	S
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions