Job Description P17334 Confidence 100.00% Date Thu Jan 5 11:36:06 GMT 2012 Rank 1 Aligned Residues 420 % Identity 32% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	E	K	V	L	L	P	F	A	V	K	I	G	K	Q	P	H	V	N	A	I	K	N	G	F	I	R	L	M	P	L	T	L	A	G	A	M	F	V	L	I	N	N	V	F	L	S	F	G	E	G	S	F	F	Y	S	L	G	I	R	L	D	A	S	T	I	E	T	L	N	G	L	K	G	I	G	G	N
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	L	E	K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	.	.	.	.	.	.	.	.	.	.	.	K	N	W	N	V	A	L	G	Y
Template Known Secondary structure				S	T	T	T	S																					G	G	G	T	T													T				T	T	T	T	T						T		.	.	.	.	.	.	.	.	.	.	.	S			T	T	G	G	G
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.												.	.	.	.	.	.	.	70	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	N	G	T	L	G	I	M	S	L	M	A	P	F	F	I	G	M	A	L	A	E	E	R	K	V	D	A	L	A	A	G	L	L	S	V	A	A	F	M	T	V	.	.	.	.	.	.	.	.	.	.	.	T	P	Y	S	V	G	E	A	Y	A	V	G	A	N	W	L	G	G	A	N	I	I	S	G	I	I
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I
Template Known Secondary structure								T	T																		T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.
Predicted Secondary structure																																																										.																				.	.
Query SS confidence																																																										.																				.	.
Query Sequence		I	G	L	V	V	A	E	M	F	T	F	I	V	R	R	N	W	V	I	K	L	P	D	S	V	P	A	S	V	S	R	S	F	S	A	L	I	P	G	F	I	I	L	S	V	M	G	I	I	A	W	A	L	N	T	W	.	G	T	N	F	H	Q	I	I	M	D	T	I	S	T	P	L	A	S	L	.	.	G	S
Query Conservation																																																										.																				.	.
Alig confidence																																																										.																				.	.
Template Conservation
Template Sequence		I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L
Template Known Secondary structure																T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	W	A	Y	V	I	F	V	P	L	L	W	F	F	G	I	H	G	A	L	A	L	T	A	L	D	N	G	I	M	T	P	W	A	L	E	N	I	A	T	Y	Q	Q	Y	G	S	V	E	A	A	L	A	A	G	K	T	F	H	I	W	A	K	P	M	L	D	S	F	I	F	L	G	G	S	G	A	T	L
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.
Template Sequence		W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	.	.	.	.	.	.	.	.	.	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L
Template Known Secondary structure																	T	T	S						T																					.	.	.	.	.	.	.	.	.	T	T						S										T	S		S	S	S	S	S	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.										.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		G	L	I	L	A	I	F	I	A	S	R	R	A	D	Y	R	Q	V	A	K	L	A	L	P	S	G	I	F	Q	I	N	E	P	I	L	F	G	L	P	I	I	M	N	P	V	M	F	I	P	F	V	L	V	Q	P	I	L	A	A	I	T	L	A	A	Y	Y	M	G	I	I	P	.	P	V	T	N	I	A	P	W
Query Conservation																																																																									.
Alig confidence																																																																									.
Template Conservation
Template Sequence		A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	S	I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W
Template Known Secondary structure													S										T	S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	P	T	G	L	G	A	F	F	N	T	N	G	S	V	A	A	L	L	V	A	L	F	N	L	G	I	A	T	L	I	Y	L	P	F	V	V	V	A	N	K	A	Q	N	A	I	D	K	E	E	S	E	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E
Template Known Secondary structure		T	S									T	T	T	T		T	T	T																															T	T
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.