Job Description P17334 Confidence 8.08% Date Thu Jan 5 11:36:06 GMT 2012 Rank 40 Aligned Residues 100 % Identity 13% Template c2wwbA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome Resolution 6.48 Å

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		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.																.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	I	M	N	P	V	M	F	I	P	F	V	L	V	Q	P	I	L	A	A	I	T	L	A	A	Y	Y	M	G	I	I	P	P	V	T	N	I	A	P	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	T	G	L	G	A	F	F	N	T	N	G	S	V	A	A	L	L	V	A	L	F
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	K	L	F	Y	T	S	N	I	P	I	I	L	Q	S	A	L	V	S	N	L	Y	V	I	S	Q	M	L	S	A	R	F	S	G	N	L	L	V	S	L	L	G	T	W	S	D	T	S	S	G	G	P	A	R	A	Y	P	V	G	G	L	C	H	Y	L	S	P	P	E	S	F	G	S	V	L	E	D	P	V
Template Known Secondary structure			B		T	T	T	S	S																									T	S			S							S	S	S	T	T		S		T	T	S	S	S			S	S	S					T	S			S	S	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.				.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		N	L	G	I	A	T	L	I	Y	L	P	F	V	V	V	A	N	K	A	Q	N	A	.	.	.	I	D	K	E	E	S	E	E	D	I	A	N	A
Query Conservation																								.	.	.
Alig confidence																								.	.	.
Template Conservation
Template Sequence		H	A	V	V	Y	I	V	F	M	L	G	S	C	A	F	F	S	K	T	W	I	E	V	S	G	S	S	A	K	D	V	A	K	Q	L	K	E	Q
Template Known Secondary structure																						T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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