Job Description P17334 Confidence 6.38% Date Thu Jan 5 11:36:06 GMT 2012 Rank 81 Aligned Residues 141 % Identity 14% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	G	G	S	G	A	T	L	G	L	I	L	A	I	F	I	A	S	R	R	A	D	Y	R	Q	V	A	K	L	A	L	P	S	G	I	F	Q	I	N	E	P	I	L	F	G	L	P	I	I	M	N	P	V	M	F	I	P	F	V	L	V	Q	P	I	L	A	A	I	T	L	A	A	Y	Y	M	G	I	I	P
Query Conservation
Alig confidence																													.	.																			.	.	.	.
Template Conservation																													.	.																			.	.	.	.
Template Sequence		N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	.	.	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	.	.	.	.	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	R	I	K	K	K	I	D	E
Template Known Secondary structure																				S									.	.											T	T	T	T	T	T			.	.	.	.																									T	T
Template Predicted Secondary structure																													.	.																			.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.															.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.								.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		P	V	T	N	I	A	P	W	T	M	P	T	G	L	G	A	F	F	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	S	V	A	A	L	L	V	A	L	F	N	L	G	I	A	T	L	.	.	.	.	.	.	.	I	Y	L	P	F	V	V	V	A	N	K	A	Q	N	A	I	D	K	E	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	G	L	R	V	S	S	Q	E	E	Y
Template Known Secondary structure		T	T																											S				G	G	G	T																																		T		S	B
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	E	D	I	A	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	L	D	L	S	Q	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions