Job Description P77318 Confidence 5.85% Date Thu Jan 5 12:27:41 GMT 2012 Rank 92 Aligned Residues 91 % Identity 16% Template c3iydC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

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		129	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		H	G	V	S	G	P	S	R	A	A	.	.	.	.	.	.	I	M	T	G	R	A	P	A	R	F	G	V	Y	S	N	T	D	A	Q	D	G	I	P	L	T	E	T	F	L	P	E	L	F	Q	N	H	G	Y	Y	T	A	A	V	G	K	W	H	L	S	K	I	S	N	V	P	V	P	E	D	K	Q	T	R	D
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																											.	.
Template Conservation																																												.	.
Template Sequence		N	P	L	G	V	P	S	R	M	N	I	G	Q	I	L	E	T	H	L	G	M	A	A	K	G	I	G	M	P	I	A	T	P	V	F	D	G	A	K	E	A	E	.	.	I	K	E	L	L	K	L	G	D	L	P	T	S	G	Q	I	R	L	Y	D	G	R	T	G	E	Q	F	E	R	P	V	T	V	G	Y	M
Template Known Secondary structure							T	T	T					T																					T	T		S						.	.					T	T	S	S	S	S		S	S	S					B		S	S	S			B		S	S				B
Template Predicted Secondary structure																																												.	.
Template SS confidence
		1099	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140			.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	D	N	F	T	T	F	S	A	E	E	W	Q	P	Q	N	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	M	L	K	L	N	H	L	V	D	D	K	M	H	A	R	S	T	G
Template Known Secondary structure					B					G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		1231	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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