Job Description P0A7V3 Confidence 100.00% Date Thu Jan 5 11:06:18 GMT 2012 Rank 5 Aligned Residues 206 % Identity 42% Template c3bbnC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:ribosomal protein s3; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Resolution 9.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.
Query Sequence		M	G	Q	K	V	H	P	N	G	I	R	L	G	I	V	K	P	W	N	S	T	W	F	A	N	T	K	E	F	A	D	N	L	D	S	D	F	K	V	R	Q	Y	L	T	K	E	L	A	K	A	S	.	.	.	.	.	.	.	.	V	S	R	I	V	I	E	R	P	A	K	S	I	R	V	T	I	H	T	A	R
Query Conservation																																																					.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	G	Q	K	I	N	P	L	G	F	R	L	G	T	T	Q	S	H	Y	S	L	W	F	S	Q	P	K	N	Y	A	E	G	L	Q	E	D	Q	K	I	R	D	C	I	K	N	Y	V	Q	K	N	T	K	T	S	S	G	V	E	G	I	A	R	I	E	I	Q	K	R	I	D	L	I	Q	V	I	I	H	M	G	F
Template Known Secondary structure								T	T	T	S	S	T	T	T	T	S			S	B						T	T	S	S																S			S	S	S	S			T	T	T	T	T							B		B	S	S	S		B							S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		P	G	I	V	I	G	K	K	G	E	D	V	E	K	L	R	K	V	V	A	D	.	.	.	I	A	G	V	P	A	Q	I	N	I	A	E	V	R	K	P	E	L	D	A	K	L	V	A	D	S	I	T	S	Q	L	E	R	R	V	M	F	R	R	A	M	K	R	A	V	Q	N	A	M	R	L	G	A	K	G	I
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		P	K	L	L	I	E	N	R	P	Q	G	V	E	D	L	K	I	N	V	Q	K	E	L	N	C	V	N	R	K	L	N	I	A	I	T	R	I	A	K	P	Y	G	D	P	N	I	L	A	E	F	I	A	G	Q	L	K	S	R	V	S	F	R	K	A	M	K	K	A	I	E	L	T	E	Q	A	D	T	K	G	I
Template Known Secondary structure		T	T	T	T	S		S	S	S		T	T											S		S	S												S		T	T	T	S								S	T	T	T	T	T	T	T								T								T	T			S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	E	V	S	G	R	L	G	G	A	E	I	A	R	T	E	W	Y	R	E	G	R	V	P	L	H	T	L	R	A	D	I	D	Y	N	T	S	E	A	H	T	T	Y	G	V	I	G	V	K	V	W	I	F	K	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	Q	I	A	G	R	I	D	G	K	E	I	A	R	I	E	W	I	R	E	G	R	V	P	L	Q	T	I	R	A	K	I	D	Y	C	A	Y	T	V	R	T	I	Y	G	V	L	G	I	K	I	W	I	F	M	G	E
Template Known Secondary structure							S			T	T		S	S													S	S		S	T	T			B									S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions