Job Description P0A7V3 Confidence 100.00% Date Thu Jan 5 11:06:18 GMT 2012 Rank 6 Aligned Residues 205 % Identity 21% Template c2xznC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:kh domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		S	T	W	F	A	N	T	K	E	F	A	D	N	L	D	S	D	F	K	V	R	Q	Y	L	T	K	E	L	A	K	A	S	V	S	R	I	V	I	E	R	P	A	K	S	I	R	V	T	I	H	T	A	R	P	G	I	V	I	G	K	K	G	E	D	V	E	K	L	R	K	V	V	A	D	I	A	G	V	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		T	R	A	I	N	K	K	K	K	F	V	A	D	G	V	F	N	A	E	L	H	S	F	F	S	K	S	L	Q	D	A	G	Y	A	G	I	E	V	R	R	T	P	T	K	T	E	I	R	I	K	A	T	K	P	Q	Q	V	I	G	V	E	G	K	K	H	K	E	L	T	Q	F	L	Q	K	R	F	G	Y	S	D
Template Known Secondary structure		S	S																												S	S											S	S									S								S	S	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
			98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.																																																																															.
Query SS confidence		.																																																																															.
Query Sequence		.	P	A	Q	I	N	I	A	E	V	R	K	P	E	L	D	A	K	L	V	A	D	S	I	T	S	Q	L	E	R	R	V	M	F	R	R	A	M	K	R	A	V	Q	N	A	M	R	L	G	A	K	G	I	K	V	E	V	S	G	R	L	G	G	A	E	I	A	R	T	E	W	Y	R	E	G	R	V	P	L	.
Query Conservation		.																																																																															.
Alig confidence		.																																																																	.														.
Template Conservation																																																																			.
Template Sequence		D	Q	I	Q	I	W	A	E	P	I	K	F	K	G	L	C	A	S	A	Q	V	E	A	M	N	Y	K	L	L	K	D	V	P	V	R	L	A	A	N	Y	I	I	K	S	V	I	Q	D	G	A	K	G	C	E	I	I	I	S	G	K	L	K	Q	Q	R	.	A	K	T	M	K	F	K	Q	G	Y	M	I	C	T
Template Known Secondary structure		T	T	S								S		G	G	G															T	T																	T	T		S										T	T	S	S	S	.														S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.
			176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.													.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure		.																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	H	T	L	R	A	D	I	D	Y	N	T	S	E	A	H	T	T	Y	G	V	I	G	V	K	V	W	I	F	K	G	.	.	.	.	.	.	.	.	.	.	.	.	E	I	L	G	G	M	A	A	V	E	Q	P	E	K	P	A	A	Q	P	K
Query Conservation		.																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	P	K	N	D	Y	I	D	V	A	V	R	H	V	F	F	K	Q	G	I	M	G	V	K	V	K	I	M	L	P	Y	E	P	N	P	A	K	K	F	G	V	K	T	P	I	P	D	N	V	I	I	H	P	P	K	Q	I	T	D	D	K	E
Template Known Secondary structure		S	S					S											S	S	S																T	T			S	S			S			S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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