Job Description P0A7V3 Confidence 100.00% Date Thu Jan 5 11:06:18 GMT 2012 Rank 8 Aligned Residues 182 % Identity 25% Template c1s1hC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Resolution 11.70 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		A	N	T	K	E	F	A	D	N	L	D	S	D	F	K	V	R	Q	Y	L	T	K	E	L	A	K	A	S	V	S	R	I	V	I	E	R	P	A	K	S	I	R	V	T	I	H	T	A	R	P	G	I	V	I	G	K	K	G	E	D	V	E	K	L	R	K	V	V	A	D	I	A	G	.	.	.	V	P	A	Q
Query Conservation																																																																											.	.	.
Alig confidence																																																																											.	.	.
Template Conservation
Template Sequence		S	K	K	R	K	L	V	A	D	G	V	F	Y	A	E	L	N	E	F	F	T	R	E	L	A	E	E	G	Y	S	G	V	E	V	R	V	T	P	T	K	T	E	V	I	I	R	A	T	R	T	Q	D	V	L	G	E	N	G	R	R	I	N	E	L	T	L	L	V	Q	K	R	F	K	Y	A	P	G	T	I	V
Template Known Secondary structure				T	T	T																			T	T	T	T									B	S	S	S		B							S								G	G	G														S		T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		I	N	I	A	E	V	R	K	P	E	L	D	A	K	L	V	A	D	S	I	T	S	Q	L	E	R	R	V	M	F	R	R	A	M	K	R	A	V	Q	N	A	M	R	L	G	A	K	G	I	K	V	E	V	S	G	R	L	G	G	A	E	I	A	R	T	E	W	Y	R	E	G	R	V	P	.	.	L	H	T	L
Query Conservation																																																																												.	.
Alig confidence																																																													.															.	.
Template Conservation																																																													.
Template Sequence		L	Y	A	E	R	V	Q	D	R	G	L	S	A	V	A	Q	A	E	S	M	K	F	K	L	L	N	G	L	A	I	R	R	A	A	Y	G	V	V	R	Y	V	M	E	S	G	A	K	G	C	E	V	V	V	S	G	K	L	R	A	.	A	R	A	K	A	M	K	F	A	D	G	F	L	I	H	S	G	Q	P	V
Template Known Secondary structure								S		G	G	G																T																	S	S		S								S		G	G	G	.	S	S				B								T	T	S	S	S		T
Template Predicted Secondary structure																																																													.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	D	I	D	Y	N	T	S	E	A	H	T	T	Y	G	V	I	G	V	K	V	W	I	F	K	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	F	I	D	T	A	T	R	H	V	L	M	R	Q	G	V	L	G	I	K	V	K	I	M	R	D	P
Template Known Secondary structure		T													S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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