Job Description P28306 Confidence 26.67% Date Wed Jan 25 15:20:47 GMT 2012 Rank 15 Aligned Residues 87 % Identity 20% Template c2exuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Resolution 2.23 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																					.																.	.	.	.	.	.	.
Query SS confidence																					.																.	.	.	.	.	.	.
Query Sequence		W	L	L	R	I	E	P	D	L	S	H	F	K	A	G	T	Y	R	F	.	T	P	Q	M	T	V	R	E	M	L	K	L	L	E	S	.	.	.	.	.	.	.	G	K	E	A	Q	F	P	L	R	L	V	E	G	M	R	L	S	D	Y	L	K	Q	L	R	E	A	P	Y	I	K	H	T	L	S	D	D	K	Y
Query Conservation																					.																.	.	.	.	.	.	.
Alig confidence														.							.																.	.	.	.	.	.	.																										.	.	.	.
Template Conservation														.																																																							.	.	.	.
Template Sequence		W	V	A	K	W	L	S	V	D	H	S	I	.	A	G	M	Y	A	I	K	V	D	G	R	L	P	A	E	V	V	E	L	L	P	H	Y	K	P	R	D	G	S	G	S	A	T	I	W	G	V	R	C	R	P	G	K	E	K	E	L	I	R	K	L	L	K	K	.	.	.	.	K	F	N	L	D	R	A	M	G
Template Known Secondary structure							T	T		T	T	S		.	S									S								T	T		T	T				T	T	S		S											T	T													.	.	.	.								S
Template Predicted Secondary structure														.																																																							.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	V	A	Q	A	L	E	L	E	N	P	E	W	I	E	G	W	F	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	K	L	K	I	L	S	I	F	Q	R	D	N	Y	T	G	R	I	Y
Template Known Secondary structure		S	S											T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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