Job Description P0A8U2 Confidence 99.96% Date Thu Jan 5 11:08:45 GMT 2012 Rank 5 Aligned Residues 237 % Identity 19% Template c3ngoA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:ccr4-not transcription complex subunit 6-like; PDBTitle: crystal structure of the human cnot6l nuclease domain in complex with2 poly(a) dna Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																		60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		L	P	P	G	S	F	A	S	I	G	Q	A	L	P	P	G	E	P	L	S	T	E	E	R	I	R	I	L	V	W	N	I	Y	K	Q	Q	R	A	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	V	L	K	N	Y	G	K	.	D	A	H	L	V	L	L	Q	E	A	Q	T	T
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence																			.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																			.	.	.	.	.
Template Sequence		L	P	P	R	P	W	I	T	L	K	E	R	D	I	L	P	S	.	.	.	.	.	A	S	F	T	V	M	C	Y	N	V	L	C	D	K	Y	A	T	R	Q	L	Y	G	Y	C	P	S	W	A	L	N	W	E	Y	R	K	K	G	I	M	E	E	I	V	N	C	D	A	D	I	I	S	L	Q	E	V	E	T	E
Template Known Secondary structure										S	S								.	.	.	.	.													G	G	G			T	T	T	T	T	T	S						S																		S
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
					82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.								.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.															.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.																												.	.	.	.	.	.	.						.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																												.	.	.	.	.	.	.						.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	P	E	L	V	Q	F	A	T	A	N	Y	L	A	A	D	Q	V	P	A	F	V	L	P	Q	H	P	S	.	.	.	.	.	.	.	G	V	M	T	L	.	.	.	S	A	A	H	P	V	Y	C	C	P	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	P	I	L	R	L	A
Query Conservation		.	.	.																												.	.	.	.	.	.	.						.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																												.	.	.	.	.	.	.						.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	F	T	L	F	L	P	A	L	K	E	R	G	Y	D	G	F	F	S	P	K	S	R	A	K	I	M	S	E	Q	E	R	K	H	V	D	G	C	A	I	F	F	K	T	E	K	F	T	L	V	Q	K	H	T	V	E	F	N	Q	V	A	M	A	N	S	D	G	S	E	A	M	L	N	R	V	M	T	K	D
Template Known Secondary structure						T							T	T	T								S		T	T	S																			T	T	T																		T		S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		135	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure												.	.	.																																						.	.	.	.																								.	.	.
Query SS confidence												.	.	.																																						.	.	.	.																								.	.	.
Query Sequence		K	S	A	L	V	T	V	Y	P	L	.	.	.	P	D	T	R	L	L	M	V	V	N	I	H	A	V	N	F	S	L	G	V	D	V	Y	S	K	Q	L	L	P	I	G	D	Q	I	A	H	H	.	.	.	.	S	G	P	V	I	M	A	G	D	F	N	A	W	S	R	R	R	M	N	A	L	Y	R	.	.	.
Query Conservation												.	.	.																																						.	.	.	.																								.	.	.
Alig confidence												.	.	.																																						.	.	.	.																								.	.	.
Template Conservation
Template Sequence		N	I	G	V	A	V	V	L	E	V	H	K	E	L	F	K	Q	L	L	I	V	A	N	A	H	M	H	W	D	P	E	Y	S	D	V	K	L	I	Q	T	M	M	F	V	S	E	V	K	N	I	L	E	K	A	S	I	P	L	V	L	C	A	D	L	N	S	L	P	D	S	G	V	V	E	Y	L	S	N	G	G
Template Known Secondary structure													G	G	G																G	G	G																																				T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
																											205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	R	E	M	S	L	R	Q	V	R	F	T	D	D	Q	R	R	R	A	F	G	R	P	L	D	F	V	F	Y	R	G	L	N	V	S	E	A	S	V	L	V	T	R	A	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	D	N	H	K	D	F	K	E	L	Y	N	E	C	L	M	N	F	S	R	I	T	H	G	F	Q	L	K	S	A	Y	E	N	N	L	M	P	Y	T	N	Y	T	F	D	F	K	G	V	I	D	Y	I	F	Y	S	K	T	H	M	N	V	L	G	V	L	G	P	L	D	P	Q	W	L	V	E	N	N	I	T
Template Known Secondary structure				T	T		G	G	G	T	T							T	T							S						T	T	T	T	T	S	S	S		S				S	S												T	T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
										250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	S	D	H	N	P	L	L	V	E	F	S	P
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	C	P	H	P	H	I	P	S	D	H	F	S	L	L	T	Q	L	E	L
Template Known Secondary structure		S	S		B	T	T	B		S	S	B
Template Predicted Secondary structure
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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