Job Description P0A8U2 Confidence 99.92% Date Thu Jan 5 11:08:45 GMT 2012 Rank 24 Aligned Residues 215 % Identity 15% Template c3i46B_ PDB info PDB header:toxin Chain: B: PDB Molecule:beta-hemolysin; PDBTitle: crystal structure of beta toxin from staphylococcus aureus f277a,2 p278a mutant with bound calcium ions Resolution 2.60 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90																	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.												.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.												.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	R	I	L	V	W	N	I	Y	K	Q	Q	R	A	.	.	.	.	.	E	W	L	S	V	L	K	N	Y	G	K	.	.	.	.	.	D	A	H	L	V	L	L	Q	E	A	Q	T	T	P	E	L	V	Q	F	A	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	L	A	A	D
Query Conservation																	.	.	.	.	.												.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.												.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	K	L	V	S	H	N	V	Y	M	L	S	T	V	L	Y	P	N	W	G	Q	Y	K	R	A	D	L	I	G	Q	S	S	Y	I	K	N	N	D	V	V	I	F	N	E	A	F	D	N	G	A	S	D	K	L	L	S	N	V	K	K	E	Y	P	Y	Q	T	P	V	L	G	R	S	Q	S	G	W	D	K	T
Template Known Secondary structure															T	T	T		T	T	S											T		S	T	T	S	S		S																				T	T	T	T								T	T	S		S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.											.
Predicted Secondary structure																																							.	.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	P	A	F	V	L	P	Q	H	P	S	G	V	M	T	L	S	A	A	H	P	V	Y	C	C	P	L	R	E	R	E	P	I	L	R	L	.	.	A	K	S	A	L	V	T	V	Y	P	L	P	D	T	R	L	L	M	V	V	N	I	H	A	V	N	F	S	L	G	.	.	.	.	.	.	.	.	.	.	V
Query Conservation																																							.	.																															.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	S	Y	S	S	T	V	A	E	D	G	G	V	A	I	V	S	K	Y	P	I	K	E	K	I	Q	H	V	F	K	S	G	C	G	F	D	N	D	S	N	K	G	F	V	Y	T	K	I	E	K	N	G	K	N	V	H	V	I	G	T	H	T	Q	S	E	D	S	R	C	G	A	G	H	D	R	K	I	R	A
Template Known Secondary structure							S	S		S	S									S	S											S				T	G	G	G	T	S												T	T															T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.															.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	Y	S	K	Q	L	L	P	I	G	D	Q	I	A	H	H	S	G	P	V	I	M	A	G	D	F	N	A	W	S	R	R	R	M	N	A	L	Y	R	F	A	R	E	M	S	L	R	Q	V	R	F	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	R	R	R	A	F	G	R	P	L	D
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence		E	Q	M	K	E	I	S	D	F	V	K	K	K	N	I	P	K	D	E	T	V	Y	I	G	G	D	L	N	V	.	.	N	K	G	T	P	E	F	K	D	M	L	K	N	L	N	V	N	D	V	L	Y	A	G	H	N	S	T	W	D	P	Q	S	N	S	I	A	K	Y	N	Y	P	N	G	K	P	E	H	L	D
Template Known Secondary structure														T	T			T	T	S											.	.		T	T	S											T	B									S		S	B		T	T	T									S	S				B
Template Predicted Secondary structure																															.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		231	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.																		250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	F	Y	R	G	.	.	.	.	L	N	V	S	E	A	S	V	L	V	T	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	H	N	P	L	L	V	E	F
Query Conservation								.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	I	F	T	D	K	D	H	K	Q	P	K	Q	L	V	N	E	V	V	T	E	K	P	K	P	W	D	V	Y	A	A	A	Y	Y	Y	V	Y	N	D	F	S	D	H	Y	P	I	K	A	Y	S
Template Known Secondary structure						B	T	T	S				S	S											S							S	S								S		S	B
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions