Job Description P0A8U2 Confidence 99.93% Date Thu Jan 5 11:08:45 GMT 2012 Rank 22 Aligned Residues 207 % Identity 14% Template c2voaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:exodeoxyribonuclease iii; PDBTitle: structure of an ap endonuclease from archaeoglobus fulgidus Resolution 1.7 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		I	R	I	L	V	W	N	I	Y	K	Q	Q	R	A	E	W	L	S	V	L	K	N	Y	G	K	D	A	H	L	V	L	L	Q	E	A	Q	T	T	P	E	.	.	L	V	Q	F	A	T	A	N	Y	L	A	A	D	Q	V	P	A	F	V	L	P	Q	H	P	S	G	V	M	T	L	S	A	A	H	P	V	Y	C
Query Conservation																																										.	.
Alig confidence																																										.	.																	.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		L	K	I	A	T	F	N	V	N	S	I	R	S	R	L	H	I	V	I	P	W	L	K	E	N	K	P	D	I	L	C	M	Q	E	T	K	V	E	N	R	K	F	P	E	A	D	F	H	R	I	G	Y	H	V	V	F	S	G	.	.	.	.	S	K	G	R	N	G	V	A	I	A	S	L	E	E	P	E	D	V
Template Known Secondary structure										S		G	G	G	T														S											G	G	G								T	T	T								.	.	.	.		T	T									S	S
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																												.	.	.	.																	.	.	.
Query SS confidence																																												.	.	.	.																	.	.	.
Query Sequence		C	P	L	R	E	R	E	P	I	L	R	L	A	K	S	A	L	V	T	V	Y	P	L	P	D	T	R	L	L	M	V	V	N	I	H	A	V	N	F	S	L	G	.	.	.	.	V	D	V	Y	S	K	Q	L	L	P	I	G	D	Q	I	A	.	.	.	H	H	S	G	P	V	I	M	A	G	D	F	N	A	W
Query Conservation																																												.	.	.	.																	.	.	.
Alig confidence																					.	.	.	.	.	.	.																	.	.	.	.																	.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		S	F	G	L	D	S	E	P	K	D	E	D	R	L	I	R	A	K	I	.	.	.	.	.	.	.	A	G	I	D	V	I	N	T	Y	V	P	Q	G	F	K	I	D	S	E	K	Y	Q	Y	K	L	Q	W	L	E	R	L	Y	H	Y	L	Q	K	T	V	D	F	R	S	F	A	V	W	C	G	D	M	N	V	A
Template Known Secondary structure				S		S	S	S	S			G	G	G							.	.	.	.	.	.	.	T	T												S		T	T	S																							T	T	S									S
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		195	.	.	.	.																	200	.	.	.	.	.	.	.	.	.	210	.	.	.																.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		S	R	R	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	Y	R	F	A	R	E	M	S	L	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	F	T	D	D	Q	R	R	R	A	F	G	R	P	L	D	F	V	F	Y	R	G	.	.	.	L	N	V	S
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		P	E	P	I	D	V	H	S	P	D	K	L	K	N	H	V	F	H	E	D	A	R	R	A	Y	K	K	I	L	E	L	G	F	V	D	V	L	R	K	I	H	P	N	E	R	I	Y	T	F	Y	D	Y	R	V	K	G	A	I	E	R	G	L	G	W	R	G	D	A	I	L	A	T	P	P	L	A	E	R	C	V
Template Known Secondary structure			S	G	G	G	B	S		T	T	T	T	T	T																T	T	T										T	T					S	B			T	T	S	T	T	T	T	T	T	T			B													T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		241	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		E	A	S	V	L	.	.	.	.	.	V	T	R	A	S	D	H	N	P	L	L	V	E	F	S	P
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.
Template Conservation
Template Sequence		D	C	Y	A	D	I	K	P	R	L	A	E	K	P	S	D	H	L	P	L	V	A	V	F	D	V
Template Known Secondary structure												S	S	S			S	B
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions