Job Description P0A8U2 Confidence 99.95% Date Thu Jan 5 11:08:45 GMT 2012 Rank 13 Aligned Residues 214 % Identity 16% Template c2jc5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease; PDBTitle: apurinic apyrimidinic (ap) endonuclease (nape) from2 neisseria meningitidis Resolution 1.50 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		I	R	I	L	V	W	N	I	Y	K	Q	Q	R	A	E	W	L	S	V	L	K	N	Y	G	K	.	D	A	H	L	V	L	L	Q	E	A	Q	T	T	P	E	L	V	Q	F	A	T	A	N	Y	L	A	A	D	Q	V	P	A	F	V	L	P	Q	H	P	S	G	V	M	T	L	S	A	A	H	P	V	Y	C	C
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		L	K	I	I	S	A	N	V	N	G	I	R	S	A	Y	K	K	G	F	Y	E	Y	I	A	A	S	G	A	D	I	V	C	V	Q	E	L	K	A	Q	E	A	D	L	S	A	D	M	K	N	P	H	G	M	H	G	H	W	H	C	A	E	K	R	G	Y	S	G	V	A	V	Y	S	K	R	K	P	D	N	V	Q
Template Known Secondary structure										S	S							T	T								T	T		S											G	G	G							S	G	G	G									S	S	T	T									S	S			S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.
Query Sequence		P	L	R	E	R	E	P	I	L	R	L	A	K	S	A	L	V	T	V	Y	P	L	P	D	T	R	L	L	M	V	V	N	I	H	A	V	N	F	S	L	G	V	D	.	.	.	.	.	.	V	Y	S	K	Q	L	L	P	I	G	D	Q	I	A	H	H	S	G	P	V	I	M	A	G	D	F	N	A	W	S	R
Query Conservation																																													.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		I	G	M	G	I	E	E	F	D	R	E	G	R	F	V	R	C	D	F	.	.	.	.	.	.	G	R	L	S	V	I	S	L	Y	L	P	S	G	S	S	A	E	E	R	Q	Q	V	K	Y	R	F	L	D	A	F	Y	P	M	L	E	A	M	K	N	E	G	R	D	I	V	V	C	G	D	W	N	I	A	H	Q
Template Known Secondary structure			S		S						T	T									.	.	.	.	.	.	T	T												T	T																									T		S													S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		197	.	.																			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.															.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		R	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	Y	R	F	A	R	E	M	S	L	R	Q	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	D	D	Q	R	R	R	A	F	G	R	P	L	D	F	V	F	Y	R	.	.	.	G	L	N	V	S	E
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		N	I	D	L	K	N	W	K	G	N	Q	K	N	S	G	F	L	P	E	E	R	E	W	I	G	K	V	I	H	K	L	G	W	T	D	M	W	R	T	L	Y	P	D	V	P	G	Y	T	W	W	S	N	R	G	Q	A	Y	A	K	D	V	G	W	R	I	D	Y	Q	M	V	T	P	E	L	A	A	K	A	V	S
Template Known Secondary structure		G	G	G	B	S		S	T	T		T	T	S	T	T	S														T	T											T	T								S		S	S					T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		242	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		A	S	V	L	V	T	R	.	A	S	D	H	N	P	L	L	V	E	F	S	P	G	K
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		A	H	V	Y	K	D	E	K	F	S	D	H	A	P	L	V	V	E	Y	D	Y	A	A
Template Known Secondary structure							S	S			S	S	B								S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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