Job Description P0A8U2 Confidence 99.97% Date Thu Jan 5 11:08:45 GMT 2012 Rank 1 Aligned Residues 229 % Identity 16% Template c2j63B_ PDB info PDB header:lyase Chain: B: PDB Molecule:ap-endonuclease; PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major Resolution 2.48 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.																.																									.	.	.
Query SS confidence																						.	.	.																.																									.	.	.
Query Sequence		P	G	E	P	L	S	T	E	E	R	I	R	I	L	V	W	N	I	Y	K	.	.	.	Q	Q	R	A	E	W	L	S	V	L	K	N	Y	G	K	.	D	A	H	L	V	L	L	Q	E	A	Q	T	T	P	E	L	V	Q	F	A	T	A	N	Y	.	.	.	L	A	A	D	Q	V	P	A	F	V	L	P	Q	H
Query Conservation																						.	.	.																.																									.	.	.
Alig confidence																						.	.	.																.																									.	.	.
Template Conservation
Template Sequence		T	D	S	D	F	D	P	S	R	M	Y	K	F	I	T	W	N	V	A	G	L	R	G	L	L	K	K	N	A	S	A	L	R	A	F	M	E	A	E	K	P	D	V	L	C	L	Q	E	T	K	L	N	V	D	E	A	D	A	N	A	T	L	G	V	V	D	G	Y	S	F	V	D	H	P	C	A	F	K	R	G
Template Known Secondary structure			G	G	G			T	T	T										S										T	T												S										B	T	T							T	S	S			T	T								B	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.													.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	G	V	M	T	L	S	A	A	H	P	V	Y	C	C	P	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	R	E	P	I	L	R	L	A	K	S	A	L	V	T	V	Y	P	L	P	D	T	R	L	L	M	V	V	N	I	H	A	V	N	F	S	L	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	G	T	R	T	Y	M	K	N	S	T	T	V	K	G	L	H	A	R	C	T	R	G	F	A	L	P	S	E	L	V	E	G	A	G	D	E	E	G	R	V	L	T	T	F	L	S	P	D	P	D	S	S	R	I	A	L	V	N	T	Y	V	A	N	S	G	M	G	L	T	R	L	P	Y	R	V	Q	S	F
Template Known Secondary structure		S															T	T							S	S													T	T										S	S																		T	T	S	T	T							T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
						164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		.	.	.	.	V	D	V	Y	S	K	Q	L	L	P	I	G	D	Q	I	A	H	H	S	G	P	V	I	M	A	G	D	F	N	A	W	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	M	N	A	L	Y	R	F	A	R	E	M	S	L	R	Q	V	.	.	.	.
Query Conservation		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		D	P	S	M	R	E	Y	L	H	R	L	D	T	W	A	T	E	N	A	A	S	S	P	H	G	F	I	W	A	G	D	L	N	V	A	E	R	D	Y	D	R	Y	Y	A	G	T	F	K	S	M	Q	E	C	S	G	F	A	P	E	E	R	M	S	F	R	E	T	M	Q	R	T	N	S	V	D	I	F	R	Q	L
Template Known Secondary structure																	T	T	T	T				S														S	T	T	S	B				S						T	T	S	T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
													215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																							.	.	.													.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																							.	.	.													.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	R	F	T	D	D	Q	R	R	R	A	F	G	R	P	L	D	F	V	F	Y	R	G	.	.	.	L	N	V	S	E	A	S	V	L	V	T	R	.	A	S	D	H	N	P	L	L	V	E	F	S	P	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																							.	.	.													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																							.	.	.													.
Template Conservation
Template Sequence		Y	P	Q	A	G	P	V	Y	S	F	W	S	Q	R	I	N	G	R	P	R	N	L	G	W	R	L	D	Y	F	V	V	S	S	R	L	A	S	Y	V	V	D	C	F	P	M	P	T	V	M	G	S	D	H	C	P	F	Q	M	W	M	R	H	P
Template Known Secondary structure		S	T	T	B		S			S	B			T	T	T	T	T	T	T	T	T			B													T	T								T	T			S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions