Job Description P0A8U2 Confidence 99.93% Date Thu Jan 5 11:08:45 GMT 2012 Rank 20 Aligned Residues 191 % Identity 18% Template c2ei9A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein; PDBTitle: crystal structure of r1bm endonuclease domain Resolution 2.00 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	R	I	L	V	W	N	I	Y	K	Q	Q	R	A	E	W	L	S	V	L	K	N	Y	G	K	D	A	H	L	V	L	L	Q	E	A	Q	T	T	P	E	L	V	Q	F	A	T	A	N	Y	L	A	A	D	Q	V	P	A	F	V	L	P	Q	H	P	S	G	V	M	T	L	S	A	A	H	P	V	Y	C	C
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	R	I	G	Q	I	N	L	G	G	A	E	D	A	T	R	E	L	P	S	I	A	R	D	L	G	L	D	I	V	L	V	Q	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	M	V	G	F	L	A	Q	C	G	A	H	P	K	A	G	V	Y	I	R	N	R	V	L	P	C	A
Template Known Secondary structure											T	T							T									T		S						S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S	S					S	S	S		S						S	S	T	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		P	L	R	E	R	E	P	I	L	R	L	A	K	S	A	L	V	T	V	Y	P	L	P	D	T	R	L	L	M	V	V	N	I	H	A	V	N	F	S	L	G	V	D	V	Y	S	K	Q	L	L	P	I	G	D	Q	I	A	H	H	S	G	P	V	I	M	A	G	D	F	N	A	W	S	R	R	R	M	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence									.	.	.	.	.									.	.	.																																.	.	.																					.	.	.
Template Conservation									.	.	.	.	.									.	.	.																																.	.	.
Template Sequence		V	L	H	H	L	S	S	.	.	.	.	.	T	H	I	T	V	V	H	I	.	.	.	G	G	W	D	L	Y	M	V	S	A	Y	F	Q	Y	S	D	P	I	D	P	Y	L	H	R	L	G	N	I	L	D	R	.	.	.	L	R	G	A	R	V	V	I	C	A	D	T	N	A	H	S	P	L	W	H	S	L	P
Template Known Secondary structure				G	G	G			.	.	.	.	.	S	S							.	.	.	T	T	T	T										T	T	S		S														.	.	.	T	T	T	S													G	G	G	T
Template Predicted Secondary structure									.	.	.	.	.									.	.	.																																.	.	.
Template SS confidence
		74	.	.	.	.	.	80						.	.	.	.	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
																200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.									.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.									.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	Y	R	F	A	R	E	M	S	L	R	Q	V	R	F	T	D	D	Q	R	R	R	A	F	G	R	.	.	.	P	L	D	F	V	F	Y	R	.	G	L	N	V	S	E	A	S	V	L	V	T	R	A	S	D	H	N	P	L	L	V	E	F	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.									.
Template Conservation
Template Sequence		R	H	Y	V	G	R	G	Q	E	V	A	D	R	R	A	K	M	E	D	F	I	G	A	R	R	L	V	V	H	N	A	D	G	H	L	P	T	F	S	T	A	N	G	E	S	Y	V	D	V	T	L	S	T	R	G	V	R	V	S	E	W	R	V	T	N	E	S	S	S	D	H	R	L	I	V	F	G	V	G
Template Known Secondary structure					S	S	S																		T	T							T	T				S				T	T												T	T										S			S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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