Job Description P0A8U2 Confidence 99.96% Date Thu Jan 5 11:08:45 GMT 2012 Rank 3 Aligned Residues 228 % Identity 13% Template c1e9nB_ PDB info PDB header:dna repair Chain: B: PDB Molecule:dna-(apurinic or apyrimidinic site) lyase; PDBTitle: a second divalent metal ion in the active site of a new2 crystal form of human apurinic/apyrimidinic endonuclease,3 ape1, and its implications for the catalytic mechanism Resolution 2.2 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		I	G	Q	A	L	P	P	G	E	P	L	S	T	E	E	R	I	R	I	L	V	W	N	I	Y	K	Q	Q	R	A	E	W	L	S	V	L	K	N	Y	G	K	.	D	A	H	L	V	L	L	Q	E	A	Q	T	T	P	E	L	V	Q	F	A	T	A	N	Y	L	A	A	D	Q	V	P	A	F	V	L	P	Q	H
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		E	D	P	P	D	Q	K	T	S	P	S	G	K	P	A	T	L	K	I	C	S	W	N	V	D	G	L	R	A	W	I	K	K	K	G	L	D	W	V	K	E	E	A	P	D	I	L	C	L	Q	E	T	K	C	S	E	N	K	L	P	A	E	L	Q	E	L	P	G	L	S	H	Q	Y	W	S	A	P	S	E	G
Template Known Secondary structure									B		T	T	S		B											S	S							T	T											S											S	S	S			G	G	G	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																									.	.	.																					.	.
Query SS confidence																																																									.	.	.																					.	.
Query Sequence		P	S	G	V	M	T	L	S	A	A	H	P	V	Y	C	C	P	L	R	E	R	E	P	I	L	R	L	A	K	S	A	L	V	T	V	Y	P	L	P	D	T	R	L	L	M	V	V	N	I	H	A	V	N	F	S	.	.	.	L	G	V	D	V	Y	S	K	Q	L	L	P	I	G	D	Q	I	A	H	H	.	.
Query Conservation																																																									.	.	.																					.	.
Alig confidence																																			.	.	.	.	.	.																	.	.	.																					.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		Y	S	G	V	G	L	L	S	R	Q	C	P	L	K	V	S	Y	G	I	G	D	E	E	H	D	Q	E	G	R	V	I	V	A	.	.	.	.	.	.	E	F	D	S	F	V	L	V	T	A	Y	V	P	N	A	G	R	G	L	V	R	L	E	Y	R	Q	R	W	D	E	A	F	R	K	F	L	K	G	L	A	S
Template Known Secondary structure		S								S	S			S					S		S		G	G	G	S	S	S							.	.	.	.	.	.			S	S													G	G	G	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	P	V	I	M	A	G	D	F	N	A	W	S	R	R	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	Y	R	F	A	R	E	M	S	L	R	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	T	D	D	Q	R	R	R	A	F	G	R	P
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	P	L	V	L	C	G	D	L	N	V	A	H	E	E	I	D	L	R	N	P	K	G	N	K	K	N	A	G	F	T	P	Q	E	R	Q	G	F	G	E	L	L	Q	A	V	P	L	A	D	S	F	R	H	L	Y	P	N	T	P	Y	A	Y	T	F	W	T	Y	M	M	N	A	R	S	K	N	V	G	W	R
Template Known Secondary structure			S									S				S	G	G	G	B	S		S	G	G	G	T	T	S	T	T	S															T	T										T	T			S			S				T	G	G	G	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		229	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure										.	.	.												.
Query SS confidence										.	.	.												.
Query Sequence		L	D	F	V	F	Y	R	G	.	.	.	L	N	V	S	E	A	S	V	L	V	T	.	R	A	S	D	H	N	P	L	L	V	E	F	S	P
Query Conservation										.	.	.												.
Alig confidence										.	.	.												.
Template Conservation
Template Sequence		L	D	Y	F	L	L	S	H	S	L	L	P	A	L	C	D	S	K	I	R	S	K	A	L	G	S	D	H	C	P	I	T	L	Y	L	A	L
Template Known Secondary structure									G	G	G	G	G	G								T	T			S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions