|   |
28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | P | D | P | A | W | Q | Q | G | T | L | S | N | G | L | Q | W | Q | V | L | T | T | P | Q | R | P | S | D | R | V | E | I | R | L | L | V | N | T | G | S | L | A | E | S | T | Q | Q | S | G | Y | S | H | A | I | P | R | I | A | L | T | Q | S | G | G | L | D | A | A | Q | A | R | S | L | W | Q | Q | G | I | D | P |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |
|
|   |
|
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   | . |   |   | . | . |   |   |
|   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   | . | . | . | . |
Template Sequence |   |
P | H | P | Q | D | L | E | I | T | K | L | P | N | G | L | V | I | A | S | L | E | N | Y | S | . |
P | G | . |
. |
S | T | I | G | V | F | I | K | A | G | S | R | Y | E | N | S | S | N | L | G | T | S | H | L | L | R | L | A | S | S | L | T | T | K | G | A | S | S | F | K | I | T | R | G | I | E | A | . |
. |
. |
. |
Template Known Secondary structure |   |
| S |
|
|
|
|
| B |
|
|
| S | S | S |
| B |
| B |
|
|
|
|
|
| . | S |  | . | . |  |  |  |  |  |  |  | S |
| S | G | G | G |
| B | T | T | B | T | T |  |  |  |  |  |  |  | G | G | G | S |
| B | S | S | S |
|  |  |  |  |  |  |  |  |  |  | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
| . |
|  | . | . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
. | . | |
|
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
|
|
|
  |
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
|
|
|
. | . | . | . | 180 | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
K | R | P | M | P | P | V | I | V | S | Y | D | T | T | L | F | N | L | S | L | P | N | N | R | N | D | L | L | K | E | A | L | S | Y | L | A | N | A | T | G | K | L | T | I | T | P | E | T | I | N | H | A | L | Q | S | Q | D | M | V | A | T | W | P | A | D | T | K | E | . |
. |
. |
. |
G | W | W | R | Y | R | L | K |
Query Conservation |   |
  |
|   |   |   |
|
|   |
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |
|   |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
V | G | G | K | L | S | V | E | S | T | R | E | N | M | A | Y | T | V | E | C | L | . |
. |
. |
R | D | D | V | E | I | L | M | E | F | L | L | N | V | T | T | A | P | E | F | R | P | W | E | V | A | D | L | Q | P | Q | L | K | I | D | K | A | V | A | F | Q | N | P | Q | T | H | V | I | E | N | L | H | A | A | A | Y |
Template Known Secondary structure |   |
 | T |
|  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  | . | . | . | S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| B |
|
|
|  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . |
  |
  |   |
184 | . | . | . | . | . | 190 | . | . | . | . | . | . | . | |
|
. | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | S | T | L | L | G | H | D | P | A | D | P | L | K | . |
. |
Q | P | V | E | A | E | K | I | K | D | F | Y | Q | K | W | Y | T | P | D | A | M | T | L | L | V | V | G | N | V | D | A | R | S | V | V | D | Q | I | N | K | T | F | G | E | L | K | G | K | R | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   | . | . |   |   |   |
|   |
|   |
|   |   |
|   |   |   |   |
|   |
|   |
|   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
| . |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |
Template Sequence |   |
R | N | A | . |
L | A | D | S | L | Y | C | P | D | Y | R | I | G | K | V | T | S | V | E | L | H | D | F | V | Q | N | H | F | T | S | A | R | M | A | L | V | G | L | G | . |
V | S | H | P | V | L | K | N | V | A | E | Q | L | L | N | I | R | G | G | L | G | L |
Template Known Secondary structure |   |
S | S | T | . | T | S | S |
| S | S |
|
| G | G | G | G | G | G |
|
|  |  |  |  |  |  |  |  |  | T | T | S |
| G | G | G |  |  |  |  |  | S | S | . | S |
|  |  |  |  |  |  |  |  | T | T |
|
| S |
|
|
| T | T |
| S |
Template Predicted Secondary structure |   |
|
|
| . |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
169 | 170 | . | |
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | |
. | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |