Job Description P37648 Confidence 100.00% Date Thu Jan 5 11:56:20 GMT 2012 Rank 18 Aligned Residues 304 % Identity 13% Template c3cxhM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:cytochrome b-c1 complex subunit 2, mitochondrial; PDBTitle: structure of yeast complex iii with isoform-2 cytochrome c2 bound and definition of a minimal core interface for3 electron transfer. Resolution 2.50 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	W	Q	V	L	T	T	P	Q	R	P	S	D	R	V	E	I	R	L	L	V	N	T	G	S	L	A	E	S	T	Q	Q	S	G	Y	S	H	A	I	P	R	I	A	L	T	Q	S	G	G	L	D	A	A	Q	A	R	S	L	W	Q	Q	G	I	D	P	K	R	P	M	P	P	V	I	V	S	Y	D	T	T
Query Conservation
Alig confidence							.								.	.																	.	.																														.	.	.	.
Template Conservation							.								.	.																	.	.																														.	.	.	.
Template Sequence		L	T	V	S	A	.	R	D	A	P	T	K	I	.	.	S	T	L	A	V	K	V	H	G	G	S	R	Y	A	T	K	.	.	D	G	V	A	H	L	L	N	R	F	N	F	Q	N	T	N	T	R	S	A	L	K	L	V	R	E	S	E	L	.	.	.	.	L	G	G	T	F	K	S	T	L	D	R	E	Y	I
Template Known Secondary structure							.				S		S		.	.								S		S	G	G	G		S	S	.	.	T	T									T	T	S		B	S	S	S												.	.	.	.		T									S	S
Template Predicted Secondary structure							.								.	.																	.	.																														.	.	.	.
Template SS confidence
		17	.	.	20	.		.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.					.	.	.	.	.	.	80	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.
Query SS confidence																																									.	.	.	.	.
Query Sequence		L	F	N	L	S	L	P	N	N	R	N	D	L	L	K	E	A	L	S	Y	L	A	N	A	T	G	K	L	T	I	T	P	E	T	I	N	H	A	L	.	.	.	.	.	Q	S	Q	D	M	V	A	T	W	P	A	D	T	K	E	G	W	W	R	Y	R	L	K	G	S	T	L	L	G	H	D	P	A	D	P	L
Query Conservation																																									.	.	.	.	.
Alig confidence									.	.	.																														.	.	.	.	.																									.
Template Conservation									.	.	.																																																											.
Template Sequence		T	L	K	A	T	F	L	.	.	.	K	D	D	L	P	Y	Y	V	N	A	L	A	D	V	L	Y	K	T	A	F	K	P	H	E	L	T	E	S	V	L	P	A	A	R	Y	D	Y	A	V	A	E	Q	C	P	V	K	S	A	E	D	Q	L	Y	A	I	T	F	R	.	K	G	L	G	N	P	L	L	Y	D	G
Template Known Secondary structure									.	.	.	G	G	G															B										T																													S	S	.	S	S	T	T	S		S	S			S
Template Predicted Secondary structure									.	.	.																																																											.
Template SS confidence
		88	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	P	V	E	A	E	K	I	K	D	F	Y	Q	K	W	Y	T	P	D	A	M	T	L	L	V	V	G	N	V	D	A	R	S	V	V	D	Q	I	N	K	T	F	G	E	L	K	G	K	R	E	T	P	A	P	V	P	T	L	S	P	L	R	A	E	A	V	S	I	M	T	D	A	V	R	Q	D	R	L	S
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		V	E	R	V	S	L	Q	D	I	K	D	F	A	D	K	V	Y	T	K	E	N	L	E	V	S	G	E	N	V	V	E	A	D	L	K	R	F	V	D	E	S	L	L	S	T	L	.	P	A	G	K	S	L	V	S	K	S	E	P	K	F	F	L	G	E	E	N	R	V	R	F	I	G	D	S	V	A	A	I	G
Template Known Secondary structure		S	S																	G	G	G							S	S												S	T	T	T	T	S	.									S	S							S								S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	W	D	T	P	W	Q	P	I	R	E	S	A	A	L	L	R	Y	W	R	A	D	L	A	R	E	A	L	F	W	H	V	Q	Q	A	L	S	A	S	N	S	K	D	I	G	L	G	F	D	C	R	V	L	Y	L	R	A	Q	C	A	I	N	I	E	S	P	N	D	K	L	N	S	N	L	N	L	V	A	R
Query Conservation
Alig confidence								.	.	.	.	.	.	.																.																		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																.																		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		I	P	V	N	K	A	.	.	.	.	.	.	.	S	L	A	Q	Y	E	V	L	A	N	Y	L	T	S	A	.	L	S	E	L	S	G	L	I	S	S	A	K	L	D	K	F	T	.	.	.	.	.	.	.	.	.	D	G	G	L	F	T	L	F	V	R	D	Q	D	S	.	.	.	.	.	.	A	V	V	S	S
Template Known Secondary structure						S	S	.	.	.	.	.	.	.	T													S	T	.	T		T	T	G	G	G		S								T	.	.	.	.	.	.	.	.	.	T											S	S		.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.																.																		.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280										.	.	.	.	.	.	.	.	.	290	.	.	.	.							.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	A	K	V	R	D	K	G	L	P	E	E	E	F	N	A	L	V	A	Q	K	K	L	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	K	K	I	V	A	D	L	K	K	G	K	D	L	S	P	A	I	N	Y	T	K	L	K	N
Template Known Secondary structure												S					S	T	T								T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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