Job Description P37648 Confidence 100.00% Date Thu Jan 5 11:56:20 GMT 2012 Rank 16 Aligned Residues 402 % Identity 12% Template c3cx5L_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:cytochrome b-c1 complex subunit 1, mitochondrial; PDBTitle: structure of complex iii with bound cytochrome c in reduced2 state and definition of a minimal core interface for3 electron transfer. Resolution 1.90 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	L	S	N	G	L	Q	W	Q	V	L	T	T	P	Q	R	P	S	D	R	V	E	I	R	L	L	V	N	T	G	S	L	A	E	S	T	Q	Q	S	G	Y	S	H	A	I	P	R	I	A	L	T	Q	S	G	G	L	D	A	A	Q	A	R	S	L	W	Q	Q	G	I	D	P	K	R	P	M	P	P	V	I
Query Conservation
Alig confidence																					.	.																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.																																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	L	S	N	G	I	V	V	A	T	E	H	N	P	S	A	H	T	.	.	A	S	V	G	V	V	F	G	S	G	A	A	N	E	N	P	Y	N	N	G	V	S	N	L	W	K	N	I	F	L	S	K	E	N	S	A	V	A	A	K	.	.	.	.	.	.	.	.	.	.	.	E	G	L	A	L	S	S	N
Template Known Secondary structure						S	S	S								T	T		S		.	.								S			G	G	G	S		T	T	T	T	T										T											.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																					.	.																																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.												.	90	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.																									.	.	.	.	.
Query SS confidence																																				.	.	.																									.	.	.	.	.
Query Sequence		V	S	Y	D	T	T	L	F	N	L	S	L	P	N	N	R	N	D	L	L	K	E	A	L	S	Y	L	A	N	A	T	G	K	L	.	.	.	T	I	T	P	E	T	I	N	H	A	L	Q	S	Q	D	M	V	A	T	W	P	A	D	T	.	.	.	.	.	K	E	G	W	W	R	Y	R	L	K	G	S	T	L
Query Conservation																																				.	.	.																									.	.	.	.	.
Alig confidence															.	.	.																			.	.	.																									.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		I	S	R	D	F	Q	S	Y	I	V	S	S	L	.	.	.	P	G	S	T	D	K	S	L	D	F	L	N	Q	S	F	I	Q	Q	K	A	N	L	L	S	S	S	N	F	E	A	T	K	K	S	V	L	K	Q	V	Q	D	F	E	D	N	D	H	P	N	R	V	L	E	H	L	H	S	T	A	F	Q	N	T	P
Template Known Secondary structure				S	S										.	.	.	G	G	G													T	T		S	S	S	T	T																																					T	T	T	S	G
Template Predicted Secondary structure															.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		188	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		L	G	H	D	P	A	D	P	L	K	.	.	Q	P	V	E	A	E	K	I	K	D	F	Y	Q	K	W	Y	T	P	D	A	M	T	L	L	V	V	G	N	V	D	A	R	S	V	V	D	Q	I	N	K	T	F	G	E	L	K	G	K	R	E	T	P	A	P	V	P	T	L	S	P	L	R	A	E	A	V	S	I
Query Conservation												.	.
Alig confidence												.	.																																																			.	.
Template Conservation																																																																.	.
Template Sequence		L	S	L	P	T	R	G	T	L	E	S	L	E	N	L	V	V	A	D	L	E	S	F	A	N	N	H	F	L	N	S	N	A	V	V	V	G	T	G	N	I	K	H	E	D	L	V	N	S	I	E	S	K	N	L	S	L	Q	T	G	T	K	.	.	P	V	L	K	K	K	A	A	F	L	G	S	E	V	R	L
Template Known Secondary structure		G	G	S		T	T							T	T														S		G	G	G								S													S				S	S					.	.
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.										.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.
Query Sequence		M	T	D	A	V	R	Q	D	R	L	S	I	M	W	D	T	P	W	Q	P	I	R	E	S	A	A	L	L	R	Y	W	R	A	D	L	A	R	E	A	L	.	.	.	.	.	.	.	.	.	F	W	H	V	Q	Q	A	L	S	A	S	N	S	K	D	I	G	L	G	F	D	C	R	V	L	Y	L	R	A	Q	C
Query Conservation																																										.	.	.	.	.	.	.	.	.
Alig confidence																									.	.																.	.	.	.	.	.	.	.	.												.
Template Conservation																									.	.																																				.
Template Sequence		R	D	D	T	L	P	K	A	W	I	S	L	A	V	E	G	E	P	V	N	S	P	N	.	.	Y	F	V	A	K	L	A	A	Q	I	F	G	S	Y	N	A	F	E	P	A	S	R	L	Q	G	I	K	L	L	D	N	I	Q	E	Y	.	Q	L	C	D	N	F	N	H	F	S	L	S	Y	K	D	S	G	L	W
Template Known Secondary structure				T	T	S	S	S												T	T		T	T	.	.																T	T	S	T	T	G	G	G	S	S		T							T	T	.	T			S										S	S
Template Predicted Secondary structure																									.	.																																				.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	N	I	E	S	P	N	D	K	L	N	S	N	L	N	L	V	A	R	E	L	A	K	V	R	D	K	G	L	P	E	E	E	F	N	A	L	V	A	Q	K	K	L	E	L	Q	K	L	F	A	A	Y	A	R	A	D	T	D	I	L	M	G	Q	R	M	R	S	L	Q	N	Q	V	V	D	I	A	P	E	Q
Query Conservation
Alig confidence																																																						.	.	.
Template Conservation																																																						.	.	.
Template Sequence		G	F	S	T	A	T	R	N	V	T	M	I	D	D	L	I	H	F	T	L	K	Q	W	N	R	L	T	I	S	V	T	D	T	E	V	E	R	A	K	S	L	L	K	L	Q	L	G	Q	L	Y	E	S	.	.	.	G	N	P	V	N	D	A	N	L	L	G	A	E	V	L	I	K	G	S	K	L	S	L	G	E
Template Known Secondary structure								S		T	T																			T																						S		.	.	.	S																	S	S
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380				.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	K	L	R	Q	D	F	L	N	S	L	T	V	E	M	L	N	Q	D	L	R	Q	Q	L	S	N	D	M	A	L	I	L	L	Q	P	K	G	E	P	E	F	N	M	K	A	L	Q	A
Query Conservation
Alig confidence						.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		A	F	K	K	.	.	.	.	I	D	A	I	T	V	K	D	V	K	A	W	A	G	K	R	L	W	D	Q	D	I	A	I	A	G	T	G	Q	I	E	G	L	L	D	Y	M	R	I	R	S
Template Known Secondary structure						.	.	.	.																	T	T	T										S		T	T	S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		406	.	.	.					410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450