Job Description P37648 Confidence 100.00% Date Thu Jan 5 11:56:20 GMT 2012 Rank 2 Aligned Residues 424 % Identity 13% Template c1sqpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome-c reductase complex core protein i, PDBTitle: crystal structure analysis of bovine bc1 with myxothiazol Resolution 2.70 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	V	Q	A	D	A	L	Q	P	D	P	A	W	Q	Q	G	T	L	S	N	G	L	Q	W	Q	V	L	T	T	P	Q	R	P	S	D	R	V	E	I	R	L	L	V	N	T	G	S	L	A	E	S	T	Q	Q	S	G	Y	S	H	A	I	P	R	I	A	L	T	Q	S	G	G	L	D	A	A	Q	A	R	S
Query Conservation
Alig confidence																																	.				.	.
Template Conservation																																	.				.	.
Template Sequence		T	A	T	Y	A	Q	A	L	Q	S	V	P	E	T	Q	V	S	Q	L	D	N	G	L	R	V	A	S	E	Q	S	S	.	Q	P	T	.	.	C	T	V	G	V	W	I	D	A	G	S	R	Y	E	S	E	K	N	N	G	A	G	Y	F	V	E	H	L	A	F	K	G	T	K	N	R	P	G	N	A	L	E	K
Template Known Secondary structure												S									T	T	S									S	.		S		.	.								S		S	S	T	T			S	T	T	T	T									T	T	S		B	S	S	S		T	T
Template Predicted Secondary structure																																	.				.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	W	Q	Q	G	I	D	P	K	R	P	M	P	P	V	I	V	S	Y	D	T	T	L	F	N	L	S	L	P	N	N	R	N	D	L	L	K	E	A	L	S	Y	L	A	N	A	T	G	K	L	T	I	T	P	E	T	I	N	H	A	L	Q	S	Q	D	M	V	A	T	W	P	A	D	T	K	E	G	W	W	.
Query Conservation																																																																																	.
Alig confidence						.	.	.	.																						.	.	.																																																.
Template Conservation						.	.	.	.																						.	.	.
Template Sequence		E	V	E	S	.	.	.	.	M	G	A	H	L	N	A	Y	S	T	R	E	H	T	A	Y	Y	I	K	A	L	.	.	.	S	K	D	L	P	K	A	V	E	L	L	A	D	I	V	Q	N	C	S	L	E	D	S	Q	I	E	K	E	R	D	V	I	L	Q	E	L	Q	E	N	D	T	S	M	R	D	V	V	F
Template Known Secondary structure						.	.	.	.		T									S	S										.	.	.	G	G	G															B																						T	T
Template Predicted Secondary structure						.	.	.	.																						.	.	.
Template SS confidence
		78	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
					179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.
Predicted Secondary structure		.	.	.																				.	.																																															.
Query SS confidence		.	.	.																				.	.																																															.
Query Sequence		.	.	.	R	Y	R	L	K	G	S	T	L	L	G	H	D	P	A	D	P	L	K	.	.	Q	P	V	E	A	E	K	I	K	D	F	Y	Q	K	W	Y	T	P	D	A	M	T	L	L	V	V	G	N	V	D	A	R	S	V	V	D	Q	I	N	K	T	F	G	E	L	K	.	G	K	R	E	T	P	A	P	V
Query Conservation		.	.	.																				.	.																																															.
Alig confidence		.	.	.																				.	.																																															.
Template Conservation
Template Sequence		N	Y	L	H	A	T	A	F	Q	G	T	P	L	A	Q	S	V	E	G	P	S	E	N	V	R	K	L	S	R	A	D	L	T	E	Y	L	S	R	H	Y	K	A	P	R	M	V	L	A	A	A	G	G	L	E	H	R	Q	L	L	D	L	A	Q	K	H	F	S	G	L	S	G	T	Y	D	E	D	A	V	P	T
Template Known Secondary structure									T	T	T	S	G	G	G	S		S	S																						S		G	G	G								S														T			S		S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.
Query Sequence		P	T	L	S	P	L	R	A	E	A	V	S	I	M	T	D	A	V	R	Q	D	R	L	S	I	M	W	D	T	P	W	Q	P	I	R	E	S	A	A	L	L	R	Y	W	R	A	D	L	A	.	.	.	.	.	.	.	.	R	E	A	L	F	W	H	V	Q	Q	A	L	S	A	S	N	S	K	D	I	G	L	G
Query Conservation																																																			.	.	.	.	.	.	.	.
Alig confidence																																						.	.												.	.	.	.	.	.	.	.
Template Conservation																																						.	.
Template Sequence		L	S	P	C	R	F	T	G	S	Q	I	C	H	R	E	D	G	L	P	L	A	H	V	A	I	A	V	E	G	P	G	W	A	H	P	D	.	.	N	V	A	L	Q	V	A	N	A	I	I	G	H	Y	D	C	T	Y	G	G	G	A	H	L	S	S	P	L	A	S	I	A	A	T	N	K	L	C	Q	S	F	Q
Template Known Secondary structure																	T	T	S	S	S												T	T		T	T	.	.																T	T		S		G	G	G		S	S									T	T			S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	C	R	V	L	Y	L	R	A	Q	C	A	I	N	I	E	S	P	N	D	K	L	N	S	N	L	N	L	V	A	R	E	L	A	K	V	R	D	K	G	L	P	E	E	E	F	N	A	L	V	A	Q	K	K	L	E	L	Q	K	L	F	A	A	Y	A	R	A	D	T	D	I	L	M	G	Q	R	M	R	S
Query Conservation
Alig confidence																																									.																							.	.	.	.	.
Template Conservation																																									.																							.	.	.	.	.
Template Sequence		T	F	N	I	C	Y	A	D	T	G	L	L	G	A	H	F	V	C	D	H	M	S	I	D	D	M	M	F	V	L	Q	G	Q	W	M	R	L	C	T	.	S	A	T	E	S	E	V	L	R	G	K	N	L	L	R	N	A	L	V	S	H	L	.	.	.	.	.	D	G	T	T	P	V	C	E	D	I	G	R	S
Template Known Secondary structure								T	T												G	G	G																		.																						S	.	.	.	.	.		S
Template Predicted Secondary structure																																									.																							.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.						370	.	.	.	.	.	.	.	.	.	380	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	N	Q	V	V	D	I	A	P	E	Q	Y	Q	K	L	R	Q	D	F	L	N	S	L	T	V	E	M	L	N	Q	D	L	R	Q	Q	L	S	N	D	M	A	L	I	L	L	Q	P	K	G	E	P	E	F	N	M	K	A	L	Q	A
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		L	L	T	Y	G	R	R	I	P	L	A	E	W	E	S	R	.	.	.	.	I	A	E	V	D	A	R	V	V	R	E	V	C	S	K	Y	F	Y	D	Q	C	P	A	V	A	G	F	G	P	I	E	Q	L	P	D	Y	N	R	I	R	S
Template Known Secondary structure					T	S	S											.	.	.	.			T														T	T	T										S		T	T	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.					.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.