Job Description P37648 Confidence 100.00% Date Thu Jan 5 11:56:20 GMT 2012 Rank 3 Aligned Residues 419 % Identity 16% Template c1hr9D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:mitochondrial processing peptidase beta subunit; PDBTitle: yeast mitochondrial processing peptidase beta-e73q mutant2 complexed with malate dehydrogenase signal peptide Resolution 3.01 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	W	Q	Q	G	T	L	S	N	G	L	Q	W	Q	V	L	T	T	P	Q	R	P	S	D	R	V	E	I	R	L	L	V	N	T	G	S	L	A	E	S	T	Q	Q	S	G	Y	S	H	A	I	P	R	I	A	L	T	Q	S	G	G	L	D	A	A	Q	A	R	S	L	W	Q	Q	G	I	D	P	K	R	P
Query Conservation
Alig confidence																										.	.																																																.	.	.	.
Template Conservation																										.	.																																																.	.	.	.
Template Sequence		P	G	T	R	T	S	K	L	P	N	G	L	T	I	A	T	E	Y	I	P	N	T	S	S	.	.	A	T	V	G	I	F	V	D	A	G	S	R	A	E	N	V	K	N	N	G	T	A	H	F	L	Q	H	L	A	F	K	G	T	Q	N	R	P	Q	Q	G	I	E	L	E	I	E	N	.	.	.	.	I	G	S
Template Known Secondary structure										T	T	S									S	S		S		.	.								S		S	G	G	G	S		T	T	T	T	T									G	G	G	B	B	S	S	S	B											.	.	.	.		T
Template Predicted Secondary structure																										.	.																																																.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		M	P	P	V	I	V	S	Y	D	T	T	L	F	N	L	S	L	P	N	N	R	N	D	L	L	K	E	A	L	S	Y	L	A	N	A	T	G	K	L	T	I	T	P	E	T	I	N	H	A	L	Q	S	Q	D	M	V	A	T	W	P	A	D	T	K	E	.	.	.	.	G	W	W	R	Y	R	L	K	G	S	T
Query Conservation																																																																			.	.	.	.
Alig confidence																				.	.	.																																													.	.	.	.
Template Conservation																				.	.	.
Template Sequence		H	L	N	A	Y	T	S	R	E	N	T	V	Y	Y	A	K	S	L	.	.	.	Q	E	D	I	P	K	A	V	D	I	L	S	D	I	L	T	K	S	V	L	D	N	S	A	I	E	R	E	R	D	V	I	I	R	E	S	E	E	V	D	K	M	Y	D	E	V	V	F	D	H	L	H	E	I	T	Y	K	D	Q
Template Known Secondary structure									S	S										.	.	.	G	G	G													S	S	B				T	T																	T	T															T	T	T	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure													.	.																																																			.	.	.
Query SS confidence													.	.																																																			.	.	.
Query Sequence		L	L	G	H	D	P	A	D	P	L	K	.	.	Q	P	V	E	A	E	K	I	K	D	F	Y	Q	K	W	Y	T	P	D	A	M	T	L	L	V	V	G	N	V	D	A	R	S	V	V	D	Q	I	N	K	T	F	G	E	L	K	G	K	R	E	.	.	.	T	P	A	P	V	P	T	L	S	P	L	R	A	E
Query Conservation													.	.																																																			.	.	.
Alig confidence													.	.																																																			.	.	.
Template Conservation
Template Sequence		P	L	G	R	T	I	L	G	P	I	K	N	I	K	S	I	T	R	T	D	L	K	D	Y	I	T	K	N	Y	K	G	D	R	M	V	L	A	G	A	G	A	V	D	H	E	K	L	V	Q	Y	A	Q	K	Y	F	G	H	V	P	K	S	E	S	P	V	P	L	G	S	P	R	G	P	L	P	V	F	C	R	G
Template Known Secondary structure		T	T	T	S		S	S																								G	G	G								S															T	T	S				S	S				T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.										.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.
Query Sequence		A	V	S	I	M	T	D	A	V	R	Q	D	R	L	S	I	M	W	D	T	P	W	Q	P	I	R	E	S	A	A	L	L	R	Y	W	R	A	D	L	A	R	.	.	.	.	.	.	.	.	.	E	A	L	F	W	H	V	Q	Q	A	L	S	A	S	N	S	K	D	I	G	L	G	F	D	C	R	V	L	Y	L
Query Conservation																																											.	.	.	.	.	.	.	.	.
Alig confidence																													.	.													.	.	.	.	.	.	.	.	.
Template Conservation																													.	.
Template Sequence		E	R	F	I	K	E	N	T	L	P	T	T	H	I	A	I	A	L	E	G	V	S	W	S	A	P	D	.	.	Y	F	V	A	L	A	T	Q	A	I	V	G	N	W	D	R	A	I	G	T	G	T	N	S	P	S	P	L	A	V	A	A	S	Q	N	G	S	L	A	N	S	Y	M	S	F	S	T	S	Y	A	D
Template Known Secondary structure								T	T		S													T	T		T	T	.	.																T	T	T	B		S	S	S	S										S	T	T		S		S										S	S
Template Predicted Secondary structure																													.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		333	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		R	A	Q	C	.	.	A	I	N	I	E	S	P	N	D	K	L	N	S	N	L	N	L	V	A	R	E	L	A	K	V	R	D	K	G	L	P	E	E	E	F	N	A	L	V	A	Q	K	K	L	E	L	Q	K	L	F	A	A	Y	A	R	A	D	T	D	I	L	M	G	Q	R	M	R	S	L	Q	N	Q	V	V
Query Conservation						.	.
Alig confidence						.	.																																																			.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		S	G	L	W	G	M	Y	I	V	T	D	S	N	E	H	N	V	R	L	I	V	N	E	I	L	K	E	W	K	R	I	K	S	G	K	I	S	D	A	E	V	N	R	A	K	A	Q	L	K	A	A	L	L	L	S	L	.	.	.	.	.	D	G	S	T	A	I	V	E	D	I	G	R	Q	V	V	T	T	G	K
Template Known Secondary structure													T	T	T																			T	T																				T	T		.	.	.	.	.		S																S	S
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.						.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	P	E	Q	Y	Q	K	L	R	Q	D	F	L	N	S	L	T	V	E	M	L	N	Q	D	L	R	Q	Q	L	S	N	D	M	A	L	I	L	L	Q	P	K	G	E	P	E	F	N	M	K	A	L	Q	A	V	W	D	Q
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		R	L	S	P	E	E	V	F	E	Q	.	.	.	.	V	D	K	I	T	K	D	D	I	I	M	W	A	N	Y	R	L	Q	N	K	P	V	S	M	V	A	L	G	N	T	S	T	V	P	N	V	S	Y	I	E	E	K	L	N	Q
Template Known Secondary structure												.	.	.	.			T														S	S	S											G	G	G
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.