Job Description P37648 Confidence 100.00% Date Thu Jan 5 11:56:20 GMT 2012 Rank 8 Aligned Residues 416 % Identity 13% Template c1hr6C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:mitochondrial processing peptidase alpha subunit; PDBTitle: yeast mitochondrial processing peptidase Resolution 2.50 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	Q	Q	G	T	L	S	N	G	L	Q	W	Q	V	L	T	T	P	Q	R	P	S	D	R	V	E	I	R	L	L	V	N	T	G	S	L	A	E	S	T	Q	Q	S	G	Y	S	H	A	I	P	R	I	A	L	T	Q	S	G	G	L	D	A	A	Q	A	R	S	L	W	Q	Q	G	I	D	P	K	R	P	M
Query Conservation
Alig confidence																						.			.	.																																																.	.	.	.
Template Conservation																						.			.	.																																																.	.	.	.
Template Sequence		N	F	K	L	S	S	L	A	N	G	L	K	V	A	T	S	N	T	P	G	.	H	F	.	.	S	A	L	G	L	Y	I	D	A	G	S	R	F	E	G	R	N	L	K	G	C	T	H	I	L	D	R	L	A	F	K	S	T	E	H	V	E	G	R	A	M	A	E	T	L	E	L	.	.	.	.	L	G	G	N
Template Known Secondary structure									T	T	S							S				.	S	S	.	.								S			G	G	G		T	T	T	T	T	T									T	T	S		B	S	S	S												.	.	.	.	T	T	S
Template Predicted Secondary structure																						.			.	.																																																.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.
Query SS confidence																																																																								.	.	.	.
Query Sequence		P	P	V	I	V	S	Y	D	T	T	L	F	N	L	S	L	P	N	N	R	N	D	L	L	K	E	A	L	S	Y	L	A	N	A	T	G	K	L	T	I	T	P	E	T	I	N	H	A	L	Q	S	Q	D	M	V	A	T	W	P	A	D	T	K	E	G	W	W	R	Y	R	.	.	.	.	L	K	G	S	T	L
Query Conservation																																																																								.	.	.	.
Alig confidence																			.	.	.																																																			.	.	.	.
Template Conservation																			.	.	.
Template Sequence		Y	Q	C	T	S	S	R	E	N	L	M	Y	Q	A	S	V	F	.	.	.	N	Q	D	V	G	K	M	L	Q	L	M	S	E	T	V	R	F	P	K	I	T	E	Q	E	L	Q	E	Q	K	L	S	A	E	Y	E	I	D	E	V	W	M	K	P	E	L	V	L	P	E	L	L	H	T	A	A	Y	S	G	E	T
Template Known Secondary structure								S	S										.	.	.	G	G	G															B																						T	T															T	T	T	S	G
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure											.	.																																																.
Query SS confidence											.	.																																																.
Query Sequence		L	G	H	D	P	A	D	P	L	.	.	K	Q	P	V	E	A	E	K	I	K	D	F	Y	Q	K	W	Y	T	P	D	A	M	T	L	L	V	V	G	N	V	D	A	R	S	V	V	D	Q	I	N	K	T	F	G	E	L	K	.	G	K	R	E	T	P	A	P	V	P	T	L	S	P	L	R	A	E	A	V	S
Query Conservation											.	.																																																.
Alig confidence											.	.																																.																.
Template Conservation																																												.
Template Sequence		L	G	S	P	L	I	C	P	R	G	L	I	P	S	I	S	K	Y	Y	L	L	D	Y	R	N	K	F	Y	T	P	E	N	T	V	A	A	F	V	G	V	P	H	.	E	K	A	L	E	L	T	G	K	Y	L	G	D	W	Q	S	T	H	P	P	I	T	K	K	V	A	Q	Y	T	G	G	E	S	C	I	P	P
Template Known Secondary structure		G	G	S		S	S			G	G	G	G	G	G																G	G	G							S	S			.												T	T
Template Predicted Secondary structure																																												.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.												.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	M	T	D	A	V	R	Q	D	R	L	S	I	M	W	D	T	P	W	Q	P	I	R	E	S	A	A	L	L	R	Y	W	R	A	D	L	A	R	E	A	.	.	.	.	.	.	.	.	.	.	.	L	F	W	H	V	Q	Q	A	L	S	A	S	N	S	K	D	I	G	L	G	F	D	C	R	V	L	Y	L	R
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	V	F	G	N	L	P	E	L	F	H	I	Q	I	G	F	E	G	L	P	I	D	H	P	D	I	Y	A	L	A	T	L	Q	T	L	L	G	G	G	G	S	F	S	A	G	G	P	G	K	G	M	Y	S	R	L	Y	T	H	V	L	N	Q	Y	Y	F	V	E	N	C	V	A	F	N	H	S	Y	S	D	S
Template Known Secondary structure						S	S	S															T	T	S	T	T																S	S			S	S	T	T	S		T	T	S						T	T	T	T		S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.				.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		A	Q	C	A	I	N	I	E	S	P	N	D	K	L	N	S	N	L	N	L	V	A	R	E	L	A	K	V	R	D	K	G	.	.	.	L	P	E	E	E	F	N	A	L	V	A	Q	K	K	L	E	L	Q	K	L	F	A	A	Y	A	R	A	D	T	D	I	L	M	G	Q	R	M	R	S	L	Q	N	Q	V	V
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.																						.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		G	I	F	G	I	S	L	S	C	I	P	Q	A	A	P	Q	A	V	E	V	I	A	Q	Q	M	Y	N	T	F	A	N	K	D	L	R	L	T	E	D	E	V	S	R	A	K	N	Q	L	K	S	S	L	L	M	N	L	.	.	.	.	.	E	S	K	L	V	E	L	E	D	M	G	R	Q	V	L	M	H	G	R
Template Known Secondary structure												G	G	G														T	T	T	T		T	T	S																						T	.	.	.	.	.	T	S																S
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.						.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.										.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.
Query Sequence		D	I	A	P	E	Q	Y	Q	K	L	R	Q	D	F	L	N	S	L	T	V	E	M	L	N	Q	D	L	R	Q	Q	L	S	N	D	.	.	.	.	.	.	.	.	.	M	A	L	I	L	L	Q	P	K	G	E	P	E	F	N	M	K	A	L	Q	A	V	W
Query Conservation																																				.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		K	I	P	V	N	E	M	I	S	K	.	.	.	.	I	E	D	L	K	P	D	D	I	S	R	V	A	E	M	I	F	T	G	N	V	N	N	A	G	N	G	K	G	R	A	T	V	V	M	Q	G	D	R	G	S	F	G	D	V	E	N	V	L	K	A	Y
Template Known Secondary structure												.	.	.	.			T															T	T					T	T												S		S	G	G	G										T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.					.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.