Return to main results Retrieve Phyre Job Id

Job DescriptionQ46814
Confidence100.00%DateThu Jan 5 12:34:41 GMT 2012
Rank14Aligned Residues584
% Identity27%Templated1t3qb2
SCOP infoMolybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380.........390.........400... ......410.........420.........430.....
Predicted Secondary structure 




















..








Query SS confidence 













































. .































Query Sequence  AASIHGHIGDMDKGFADADVIIERTYNSTQAQQCPTETHICFTRMD. . GDRLVIHASTQVPWHLRRQVARLVGMKQHKVH
Query Conservation          

   

  
  


       
 
  


   

   ..   
 
  


 
      

  



   
 
Alig confidence 













































..































Template Conservation    
    


   

  
  


  
      
  


   

  
   
 
 
  


 
      

  



   

Template Sequence  VSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIE
Template Known Secondary structure 



SS
BB



SS

TTTT

S
T

GGG
Template Predicted Secondary structure 





























Template SS confidence 















































































   166...170.........180.........190.........200.........210.........220.........230.........240.....
 
   436...440.........450..... ....460.........470.........480.........490.........500.........510....
Predicted Secondary structure 













.

















Query SS confidence 



















.


























































Query Sequence  VIKERVGGGFGSKQDILLEE. VCAWATCVTGRPVLFRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGP
Query Conservation 
    







       . 




   




   

 
 
     
       
 
   

 
 
       
 

Alig confidence 



















.


























































Template Conservation 
    





 
         


 
   




   

 
       
       
     

 
 
       
 

Template Sequence  VRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGA
Template Known Secondary structure 



S

TTTTSS

TS


S
BB


TT



S
Template Predicted Secondary structure 

































Template SS confidence 















































































   246...250.........260.........270.........280.........290.........300.........310.........320.....
 
   515....520... ......530.........540.........550.........560.........570.........580.........590.
Predicted Secondary structure 




...

























Query SS confidence 








. . .



































































Query Sequence  YGNHSLTVP. . . CNGPALSLPLYPCDNVDFQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNR
Query Conservation         
 ...          
 


       
 

     
 

 
  
   
 
  

 

  

 

 


  
 
Alig confidence 








...



































































Template Conservation 
                     
 


 
     
 

  
 

 

 
  
  

 
  

 

  




 
 
  
 
Template Sequence  YNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNV
Template Known Secondary structure  S

TTT
GGGTTTTTTB

S

SSS
B


TTTTT

TTB
Template Predicted Secondary structure 
































Template SS confidence 















































































   326...330.........340.........350.........360.........370.........380.........390.........400.....
 
   592..... ..600.........610.........620.........630......... 640.........650........
Predicted Secondary structure 





...























.....






.....
Query SS confidence 





. . .









































. . . . .


















. . . . .
Query Sequence  VHEGQE. . . LKILGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSSPKP. . . . . QNGDWHIGRGVAIIMQKSG. . . . .
Query Conservation     

 ...                           
              .....       
 


      
.....
Alig confidence 





...









............



















.....


















.....
Template Conservation     
        
      ............     
                      
   


 
      
 
   
Template Sequence  VMPEDFPFTNRLGQTHREG. . . . . . . . . . . . TYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRT
Template Known Secondary structure 

GGG
S
TTS

S
............

TTTS

Template Predicted Secondary structure 


















............















Template SS confidence 















































































   406...410.........420.... .....430.........440.........450.........460.........470...
 
   659660.........670.........680.........690.........700.........710.........720.........730...
Predicted Secondary structure  .....




































Query SS confidence  . . . . .










































































Query Sequence  . . . . . IPDIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCF
Query Conservation  .....        
 
 
  



 
  
  
 


  
   



  



   
 
   

   
    
  
  
  
Alig confidence  .....


























































.














Template Conservation               
 
 
  

 
 
  
  
 


  
   

 

 



   
 
   

 .     

 


 
  
Template Sequence  LSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTK. NTYGFGAYASRGAVI
Template Known Secondary structure  TT





B
TTS
S


SSS
TS
GGG
SBTT.S

B

S
TT
Template Predicted Secondary structure 






























.







Template SS confidence 















































































   474.....480.........490.........500.........510.........520.........530....... ..540.........550..
 
   734.....740.........750.........760.........770..... ....780.........790.... .....800.....
Predicted Secondary structure 








..










......










Query SS confidence 









































. .


















. . . . . .










Query Sequence  SGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGK. . KGEVSFGDIAHKGETGTGF. . . . . . GSLVGTGSYIT
Query Conservation   
 

  
   
  

   

                     ..            
      ......           
Alig confidence 









































..


















......










Template Conservation   
 

  

  
   
   

         
    
 
             
                   
        
Template Sequence  GAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDP
Template Known Secondary structure  TS
GGGTTTT
GGG

TT







Template Predicted Secondary structure 



































Template SS confidence 















































































   553......560.........570.........580.........590.........600.........610.........620.........630..
 
   806...810.........820.........830.........840.........850.........860.........870.........880.....
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  PDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATLRAIGHSMSEEIIYDAEGHPLTRDLRSYG
Query Conservation 
      

   




 


   


  

 


  


 

 











  
 

   
  
 
 
     

Alig confidence 















































































Template Conservation          
   




  

 
 
     
 
 
 



  
 


 

   


 

 

   
  
         
 
Template Sequence  SDLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYL
Template Known Secondary structure  SS
TTT


BS
S
T

B
B
TTS
B


STTTS
Template Predicted Secondary structure 































Template SS confidence 















































































   633......640.........650.........660.........670.........680.........690.........700.........710..
 
   886...890.........900.........910.........920.........930...... ...940.........950.....
Predicted Secondary structure 


























...






Query SS confidence 


















































. . .


















Query Sequence  APKIGDIPRDFRAVLVPSDDKVGPFGAKSISEIGVNGAAPAIATAIHDACG. . . IWLREWHFTPEKILTALEK
Query Conservation 

   


    
 

         









     

 


  
 
... 
    
 




  

  
Alig confidence 







.









































...


















Template Conservation 

   


. 
 
  

      
 






       


 


  
 
   


  

 


 
  

  
Template Sequence  IPTTLDVP. DIRIRHLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQE
Template Known Secondary structure 


TTT

.





TTSGGGB


TTGGGT



S

T
Template Predicted Secondary structure 







.






























Template SS confidence 








































































   713......720 .........730.........740.........750.........760.........770.........780....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions