Job Description Q46814 Confidence 100.00% Date Thu Jan 5 12:34:41 GMT 2012 Rank 19 Aligned Residues 311 % Identity 28% Template c3hrdF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.		.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		W	H	I	G	R	G	V	A	I	I	M	Q	K	S	G	I	P	D	I	.	D	Q	A	N	C	M	I	K	L	E	S	D	G	T	F	I	V	H	S	G	G	A	D	I	G	T	G	L	D	T	V	V	T	K	L	A	A	E	V	L	H	C	P	P	Q	D	V	H	V	I	S	G	D	T	D	H	A	L	F	D
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		K	K	R	G	K	G	V	G	S	M	W	Y	G	I	G	N	T	G	L	P	N	P	A	A	A	F	V	E	I	H	G	D	G	S	A	N	V	M	F	G	A	A	D	I	G	Q	G	S	G	T	A	M	A	Q	I	A	A	E	E	L	G	L	D	Y	E	K	I	H	V	T	W	G	D	T	M	V	T	P	D	G
Template Known Secondary structure																S	S	T	T	S												T	T	S											S	S	S															T			G	G	G						S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.			.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.
Predicted Secondary structure																																																						.	.																			.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.																			.	.	.	.	.	.	.	.
Query Sequence		K	G	A	Y	A	S	S	G	T	C	F	S	G	N	A	A	R	L	A	A	E	N	L	R	E	K	I	L	F	H	G	A	Q	M	L	G	E	P	V	A	D	V	Q	L	A	T	P	G	V	V	R	G	.	.	K	K	G	E	V	S	F	G	D	I	A	H	K	G	E	T	G	T	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.																			.	.	.	.	.	.	.	.
Alig confidence																																																						.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	T	S	A	S	R	Q	T	L	I	T	G	N	A	V	I	L	A	C	R	Q	A	K	E	T	L	A	K	T	A	A	E	K	L	D	C	A	P	E	E	L	S	F	R	D	N	T	V	F	I	T	A	D	P	E	R	S	M	T	Y	G	E	L	M	A	A	M	K	A	A	G	R	M	A	V	G	A	G	S
Template Known Secondary structure				S		T	T																											T	T	S		S	S						S	T	T	B				S	S	S	S	S	S				B											T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
					793	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	G	F	G	S	L	V	G	T	G	S	Y	I	T	P	D	F	A	F	P	Y	G	A	N	F	A	E	V	A	V	N	T	R	T	G	E	I	R	L	D	K	F	Y	A	L	L	D	C	G	T	P	V	N	P	E	L	A	L	G	Q	I	Y	G	A	T	L	R	A	I	G	H	S	M	S	E	E	I	I
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		Y	N	P	N	T	T	G	L	A	P	E	N	M	S	G	I	P	F	E	V	Y	S	Y	A	T	T	I	A	E	V	E	V	D	T	E	T	G	E	V	D	V	L	K	V	V	S	A	H	D	V	G	T	P	I	N	R	S	M	V	E	G	Q	I	E	G	G	V	T	M	G	Q	G	F	V	L	M	E	E	I	E
Template Known Secondary structure											T	T	T			S				S															T	T	T															S	S		S																						T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		870	.		.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		Y	D	.	A	E	G	H	P	L	T	R	D	L	R	S	Y	G	A	P	K	I	G	D	I	P	R	D	F	R	A	V	L	V	P	S	D	D	K	V	G	P	F	G	A	K	S	I	S	E	I	G	V	N	G	A	A	P	A	I	A	T	A	I	H	D	A	C	G	I	W	L	R	E	W	H	F	T	P	E	K
Query Conservation				.
Alig confidence				.																							.
Template Conservation																											.
Template Sequence		V	N	T	K	N	G	A	I	K	N	P	S	M	S	K	Y	I	I	P	S	N	R	D	V	P	.	E	I	H	S	I	L	V	E	S	E	G	G	P	G	P	F	G	A	K	G	V	G	E	P	A	L	I	P	M	I	P	A	V	V	A	A	I	E	D	A	L	G	T	R	F	T	H	T	P	I	M	P	K	D
Template Known Secondary structure				T	T	T	T			S			S	T	T	T	S					T	T	T			.											S			S	G	G	G					T	T	T	T	T	T	T														T					S	S
Template Predicted Secondary structure																											.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		949	950	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	T	A	L	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	A	A	V	K	A
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions